PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G32620.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 449aa    MW: 49957.4 Da    PI: 7.7416
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G32620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.26.1e-081972291955
                      HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++e LrellP+     ++K +Ka+ L +++eYI+ Lq
  ORUFI02G32620.1 197 RLEILRELLPHT----DQKRDKASFLSEVIEYIRFLQ 229
                      5899*******8....8*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.502178228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-9195238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-5197229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.25E-7197233No hitNo description
Gene3DG3DSA:4.10.280.107.1E-12197241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MQLFQGEEPA HDFLSLRAGG GSSSPPFQHR EEQHSSHSSR GYGMEIRRSL RPLDLAKQRG  60
RSSGNGTAAG SAVDGASPAG SDSEEHVLPG GVGTFSIRHA SGTPSREEAG SHGGVRRSAF  120
AFAPALHGAR MENAHETGGR SGSRAHRAPS TMWQDSAIDQ RSIGQTPYEA FNSKTISYKY  180
MVQEMCSKMQ FFMLSFRLEI LRELLPHTDQ KRDKASFLSE VIEYIRFLQE KVQKYEEADP  240
ERNHEDSKSM PWAKVYYRSC WRNTKNTSQV QGEDLSPSTQ DMNNEQYGPK HISAAQPALF  300
NTQSVTSTTT SSSHMATGTP QNLEKNSTPS NQPPWLSMST MRQESEPGNK MPNKHEKQTL  360
HDENHSISSA YSQGLFNRLT EALKKSGLDP SQANIAVEIN LAKRARDNTS DNSKIVCLII  420
ILYLCPDFTS QINEDEEPIQ ITKRRCNKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0682280.0AK068228.1 Oryza sativa Japonica Group cDNA clone:J013148L19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627558.10.0transcription factor BIM2
RefseqXP_015627559.10.0transcription factor BIM2
RefseqXP_015627560.10.0transcription factor BIM2
TrEMBLA0A0E0NKE00.0A0A0E0NKE0_ORYRU; Uncharacterized protein
STRINGORUFI02G32620.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.33e-22bHLH family protein