PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G31200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Dof
Protein Properties Length: 309aa    MW: 32120.6 Da    PI: 8.2858
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G31200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.91.3e-3958117261
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                      +++ lkcprC+st+tkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk++
  ORUFI02G31200.1  58 HDQPLKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGSLRNVPVGGGCRKNKRA 117
                      7899*****************************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-3257116IPR003851Zinc finger, Dof-type
PfamPF027013.1E-3359116IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.22762116IPR003851Zinc finger, Dof-type
PROSITE patternPS01361064100IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010067Biological Processprocambium histogenesis
GO:0010087Biological Processphloem or xylem histogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MAGAPPMHIC MDSDWLKGIV PEEHGMGSSS PSAELIACPR APMQAAAAAA DRRLRPQHDQ  60
PLKCPRCEST HTKFCYYNNY SLSQPRYFCK TCRRYWTKGG SLRNVPVGGG CRKNKRAPPK  120
KAAAHAQPAV AVAAALQGRH METGLHLSFS GMQHHLAPPP PAAATAADPL CSLGLFDWKQ  180
YDPVFAGSGG GGSPVAALES AGGSEAQFMG AGMMGIGGGG VAEYHALSAL RFAAGLGDHL  240
ALPFGAVRAE HDAVEVKPVA AERLLSLEWC GEASRTAAPE SSISSLGGLG LWSGMIGGGH  300
HHHGSSAAI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00580DAPTransfer from AT5G62940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4804960.0AF480496.1 Oryza sativa clone BAC 49D11, complete sequence.
GenBankAP0053230.0AP005323.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0680A05.
GenBankAP0058440.0AP005844.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0060O16.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623280.10.0dof zinc finger protein DOF3.1
TrEMBLA0A0E0NJV80.0A0A0E0NJV8_ORYRU; Uncharacterized protein
TrEMBLB9GCY50.0B9GCY5_ORYSJ; Uncharacterized protein
STRINGORUFI02G31200.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47043263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62940.19e-36Dof family protein