PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G21080.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 424aa    MW: 44392 Da    PI: 5.724
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G21080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.11.3e-07171195731
                      HHHHHHHHHHHHHHHHHHCTSCCC. CS
              HLH   7 erErrRRdriNsafeeLrellPkas 31 
                       rEr RR+r+N+ f+ +r+l+P+++
  ORUFI02G21080.1 171 VRERERRRRMNDMFAGIRRLVPNLP 195
                      59*********************64 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-7162198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-4170197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-5172195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MSQEEQRHGR QLPLATSGVI TFNGVPLSPL TAGVESDGDD DVVIVDACNN GKRKVVCNAS  60
GYICIDPQEW EHWILAMVVH EEQRHGRQLP LATSGVITFN GVPLSPLTAG AESDGDDDDV  120
VIVDACNNGK RKVGDGEEEG RGSQGGDDDD DVVAVHGGGG GGGNRACMFA VRERERRRRM  180
NDMFAGIRRL VPNLPEKGEE VRMEAQKQEL QRERDRLAME VAAAAGGAGA SSSSSSAAAA  240
AVTVAAYGPA GAVGSSSSSA AAAARANTVV PVPQRAARGA TAPTPRPVAP PQAGTWPLPA  300
PAAMPPPPPP PTGAAAVAPP PSLKTWSWGD NVVVSVLGNI GNMTVRAPLR RTGVLAMASA  360
ALKRYNITAV TSLSGTDASR TQNMFMFYTI IDMPDRQPQF VHPKVFEAMY RAAAAEIAAW  420
INCY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056110.0AP005611.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878834.11e-157uncharacterized protein LOC107276567 isoform X2
TrEMBLA0A0E0NG770.0A0A0E0NG77_ORYRU; Uncharacterized protein
STRINGORUFI02G21080.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1814277