PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G12830.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 576aa    MW: 61262 Da    PI: 6.2074
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G12830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57342.91.3e-13201290798
           DUF573   7 wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsk.sqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                      w+ +De+ +L  l+   +++g++   ++++++  v +s++ k  k s++ eK+rrLK++++   kk+++g +   +ke+d  +++ls+ iWg+
  ORUFI02G12830.1 201 WTTDDEVKILEVLVAHFKSHGTQ--LNVEGIIAAVGDSLERKSIKySDMYEKVRRLKQRYEATAKKVEHGGDLP-AKEDDLRMYQLSSEIWGK 290
                      **************999999954..699***********98865538***********************9965.567889**********95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.1E-19201289IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MARKRRAPTP PPPPPPPPEA ESSADSSGEE EEEEEEERES PVAPPPQKPS GRGAASSDEE  60
EEEEEEDSDT DTYAQCFQLR KVGGGDEEGE EVEGDSSESE PEPEPVKKES AKKAKAEAKK  120
KRAAPEPAPS GKAKKAKPEK SSSAAAPEPA PSLGKSKKAA KAEAAKAAAA EPAPSTGKVS  180
KSKLAPEPSP SSKSGKALSR WTTDDEVKIL EVLVAHFKSH GTQLNVEGII AAVGDSLERK  240
SIKYSDMYEK VRRLKQRYEA TAKKVEHGGD LPAKEDDLRM YQLSSEIWGK NAKDAGNSSK  300
NKKGQAKKDK VSGDSKEAAK EDKVDEAAIA VNEKGGTLAE NKKGKTNKQK TGMETKVGSS  360
KEAALAASPT KGKKKGSHKD KLDEEAKSGT AKVTSTIATD DDDGTLGGSK REKAGKEELD  420
GDTHIVMPKE ATTTAASDDG TLVGSKKGKA DNGKLDGDTH SVMPKEATAG TQNGGILTGG  480
ENHKEKVDKD ANVPSIRREY AELQSLYPNL ASFVNGIEAQ HPCGSTFKRA FEFISDDKAC  540
TLESKIKKQK IAEVRMQLRL ADTKKEVANA LLGLLD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626761.10.0PREDICTED: neurofilament medium polypeptide
TrEMBLA0A0E0ND820.0A0A0E0ND82_ORYRU; Uncharacterized protein
STRINGLOC_Os02g18660.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72892737