PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G31350.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 393aa    MW: 40296.7 Da    PI: 7.0573
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G31350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH192.5e-06290330954
                      HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       r RR+r+ +++  L++l+P  +      K++ a++L +A  Y+k L
  ORUFI01G31350.1 290 ARLRRERVSDRLRVLQKLVPGgN------KMDTASMLDEAASYLKFL 330
                      599*****************955......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.24E-10272335No hitNo description
PROSITE profilePS5088814.189281330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-13287340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-11287336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-10290339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
METFGWAGGG QLMHHDDIYL PRSVGCGRPF ELDDAFLGAC FGAQLQCDGG VGGGDGGGCL  60
QGTSGFGAVA GDPLGLLCSG DVFASVAEGA GGAHDDGLLD AALAFSRNQL GGAACDGSDG  120
GAVSNGAMLS SYSGTTGGNI SSGESNNYSG GGGGYDAEVV SPTSTMSAAT QSLHPKRKLY  180
DDHHHPAGIA AAAAAPPLAP CPRPTTGAVA AKRRASTSAT SITFGHQPHH HHAGATTAGY  240
EPDMEAMAQV KEMIYRAAAM RPVHLGTEAA ADKPRRKNVR ISSDPQTVAA RLRRERVSDR  300
LRVLQKLVPG GNKMDTASML DEAASYLKFL KSQVQKLETL GTTTTTSKLP QQYYSGNINS  360
SNNHHGFLGF AANNNTISAG YANSNAGNAT KLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271277DKPRRKN
2272277KPRRKN
3290295RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1061190.0AK106119.1 Oryza sativa Japonica Group cDNA clone:001-207-E08, full insert sequence.
GenBankAP0032730.0AP003273.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0510F09.
GenBankAP0033810.0AP003381.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0692C11.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629328.10.0transcription factor LATE FLOWERING-like
RefseqXP_015629344.10.0transcription factor LATE FLOWERING-like
TrEMBLA0A0E0FRY10.0A0A0E0FRY1_ORYNI; Uncharacterized protein
TrEMBLA0A0E0N1G20.0A0A0E0N1G2_ORYRU; Uncharacterized protein
TrEMBLA0A2H4CAL80.0A0A2H4CAL8_ORYSA; BHLH family transcription factor
TrEMBLQ8S0N20.0Q8S0N2_ORYSJ; BHLH transcription factor-like
STRINGORUFI01G31350.10.0(Oryza rufipogon)
STRINGOS01T0707500-010.0(Oryza sativa)
STRINGONIVA01G32170.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.12e-34bHLH family protein