PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G26140.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 339aa    MW: 36862.7 Da    PI: 6.691
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G26140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.87e-33271182102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      F+ k+y+++ d++++ l++w +++nsfvv+d+  f++ +Lp +Fkh nf+SFvRQLn+YgF+kv+ ++         weF+h+sF +g+++ll 
  ORUFI01G26140.1  27 FVAKTYQMVCDPRTDALVRWGRDNNSFVVVDPAAFSQLLLPCFFKHGNFSSFVRQLNTYGFRKVHPDR---------WEFAHESFLRGQTHLLP 111
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i r+k+
  ORUFI01G26140.1 112 RIVRRKK 118
                      ****987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-3622116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-5123116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.62E-3423116IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.3E-2927116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-162750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-166577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-167890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDGLHTELAL GLIGCCGGDG QQQTAPFVAK TYQMVCDPRT DALVRWGRDN NSFVVVDPAA  60
FSQLLLPCFF KHGNFSSFVR QLNTYGFRKV HPDRWEFAHE SFLRGQTHLL PRIVRRKKRG  120
EGGGGGGGAS CSFGGGAGEH QVAAAAASVG MSGEEEDAAE DVLAKEAALF EEVQRLRHEQ  180
TAIGEELARM SQRLQATERR PDQLMSFLAK LADDPNAVTG HLLEQAAERK RRRQHLPSHE  240
PTVCPLPPAP PPQPPQPLLA LAGAAAMDGT YWWTTEHHHH HHHQMKPMTV LPSLEPPTAS  300
CGVHQVPELG GGGVMGLTTD GEAKVEPPFP FCLLGQAFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-221711619129Heat shock factor protein 1
5d5v_B2e-221711619129Heat shock factor protein 1
5d5v_D2e-221711619129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228232RKRRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0694790.0AK069479.1 Oryza sativa Japonica Group cDNA clone:J023019J23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636084.10.0PREDICTED: heat stress transcription factor C-1a
SwissprotQ6VBA40.0HFC1A_ORYSJ; Heat stress transcription factor C-1a
TrEMBLA0A0D3ERF20.0A0A0D3ERF2_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9YBX80.0A0A0D9YBX8_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0MZG90.0A0A0E0MZG9_ORYRU; Uncharacterized protein
STRINGLOC_Os01g43590.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.16e-57heat shock transcription factor C1