PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G25330.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 400aa    MW: 44036.1 Da    PI: 7.2373
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G25330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR20.97.1e-07348369223
              TCR   2 ekkgCnCkkskClkkYCeCfaa 23 
                      + kgC C ks C k+YCeC + 
  ORUFI01G25330.1 348 QVKGCACCKSGCRKLYCECLQV 369
                      689****************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.101.1E-438174IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF078006.6E-6454209IPR012866Protein of unknown function DUF1644
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MPKDRSTRAV SYERRRSRVS PYPSNGKGCA RRSEESAAAA AAAAAAAKQA AEWEDVRCPV  60
CMDHPHNAVL LVCSSHEKGC RPFMCDTSYR HSNCFDQYRK ASKESSKDSG ASAAAAPECS  120
ECQQPIKLSC PLCRGPVSHW TKDYDARKYL NVKVRACTKE SCEFRGAYGQ LRRHARENHP  180
TVRPTQVDPE RQRDWHRMEQ QRDLGDLFSM LRSGLSARED GIGVSEGEED ISERALHSPS  240
ITMVFIVRTG RSILHYREAF PGHHRRRTIL LLGEAFGRES SPLGGASGSG DGDTTAREND  300
EGDDDATLST EALAGSQHDG EVDGIQLSLL LPPFLELQIL MVASVRNQVK GCACCKSGCR  360
KLYCECLQVT DTDIQRFDDN GDSSGTSGYS SGTIMGQYKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8416490.0CT841649.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C104K23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617030.10.0uncharacterized protein LOC4325319
TrEMBLA0A0E0MZ710.0A0A0E0MZ71_ORYRU; Uncharacterized protein
STRINGORUFI01G25330.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP809522