PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G24090.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 165aa    MW: 17940.1 Da    PI: 6.8877
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G24090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP74.43.3e-231892466
              TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............................................s 66
                     ++a+caar+F+L++eLG+++d++t++WLlqqa+pai  ++gt                                               
  ORUFI01G24090.1  1 MPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVTAMGTgvgadirrtlppfpklrplqvappppphvgcrrgvrrchigfatmfA 89
                     9*****************************************88777777777777777776666555555555444444444444330 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136920.645139IPR017887Transcription factor TCP subgroup
PfamPF036347.1E-17142IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MPALCAARIF QLTRELGHKS DGETVQWLLQ QAEPAIVTAM GTGVGADIRR TLPPFPKLRP  60
LQVAPPPPPH VGCRRGVRRC HIGFATMFAA HVAAAMPGLE LGHSQDGHIG VLFARSLSQF  120
YHQVGGASAT GQLPHPHHHH QHHQQQQEDG EDDRDDGESD EESGK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAP0033330.0AP003333.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1103C09.
GenBankAP0032530.0AP003253.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0451D05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638501.11e-117PREDICTED: transcription factor TCP20-like
TrEMBLA0A0E0MYR91e-118A0A0E0MYR9_ORYRU; Uncharacterized protein
STRINGBRADI2G59240.11e-42(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28643269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.11e-21TCP family protein