PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G23050.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 264aa    MW: 29053.5 Da    PI: 8.3272
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G23050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.74.9e-1482129355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      ++h + ErrRR+++N+ f  L++l+P+ +      K++Ka+iL +++ Y+k+L+
  ORUFI01G23050.1  82 KNHVMSERRRREKLNEMFLILKSLVPSiD------KVDKASILSETIAYLKELE 129
                      5899***********************66......****************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.96779128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.21E-1482133No hitNo description
PfamPF000101.6E-1183129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-1783139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-1883144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-1685134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MEIDDDVIYS LIRNWDNDSS SSWIELLDHA IVSPASCFVP WKRTELDKEA VAGGEAAQRL  60
LKKVVGGGGA WMNRAAGSCS IKNHVMSERR RREKLNEMFL ILKSLVPSID KVDKASILSE  120
TIAYLKELER RVQELESGKK VSRPAKRKPC SETIIGGGGG GGAGAVKEHH HWVLSESQEG  180
TPSDVRVIVM DKDELHLEVQ CRWKELMMTR VFDAIKSLRL DVLSVQASAP DGLLGLKIRA  240
KYASSAAVVP AMISETLRTA VAGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-1283139864Transcription factor MYC2
5gnj_B2e-1283139864Transcription factor MYC2
5gnj_E2e-1283139864Transcription factor MYC2
5gnj_F2e-1283139864Transcription factor MYC2
5gnj_G2e-1283139864Transcription factor MYC2
5gnj_I2e-1283139864Transcription factor MYC2
5gnj_M2e-1283139864Transcription factor MYC2
5gnj_N2e-1283139864Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18792ERRRRE
28893RRRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0029080.0AP002908.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0013G02.
GenBankAP0033100.0AP003310.5 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0022F12.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878345.11e-178anthocyanin regulatory R-S protein
SwissprotP130272e-67ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBLA0A0E0MYE40.0A0A0E0MYE4_ORYRU; Uncharacterized protein
STRINGORUFI01G23050.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.33e-31bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Perrot GH,Cone KC
    Nucleotide sequence of the maize R-S gene.
    Nucleic Acids Res., 1989. 17(19): p. 8003
    [PMID:2798145]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]