PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G13250.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 379aa    MW: 40740 Da    PI: 6.6533
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G13250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.22.5e-07180222754
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      + E++RR r+ ++++ L  l+P++     +K + a++   A+eYI++L
  ORUFI01G13250.1 180 KKEKQRRLRLTEKYNALMLLIPNR-----TKEDRATVISDAIEYIQEL 222
                      57*********************9.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.264173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-4179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-5180222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-9182243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.01E-6182222No hitNo description
Gene3DG3DSA:4.10.280.108.6E-8182246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MYHPQCELLM PLESLEMDVG QSHLAAAVAA AMPGELNFHL LHSLDAAAAA ASSTAASASS  60
QPTVDYFFGG ADQQPPPPAA VQYDQLAAPH HHQTVAMLRD YYGGHYPPPA AAAAATEAYF  120
RGGPRTAGSS SLVFGPADDE SAFMVGPFES SPTPRSGGGR KRSRATAGFH GGGPANGVEK  180
KEKQRRLRLT EKYNALMLLI PNRTKEDRAT VISDAIEYIQ ELGRTVEELT LLVEKKRRRR  240
EMQGDVVDAA TSSVVAGMDQ AAESSEGEVM AAAAMGAVTP PPRQAPIRST YIQRRSKETF  300
VDVRIVEDDV NIKLTKRRRD GCLAAASRAL DDLRLDLVHL SGGKIGDCHI YMFNTKIHPG  360
SPVFASAVAS RLIEVVDEY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158164GRKRSRA
2234239KKRRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the E-box-containing promoter regions of the transcription factors TDR and EAT1, activating their expression. May have a role in specifying the cell pattern of the inner anther walls and functioning in meiosis progression. Required for male reproduction (PubMed:24755456). Acts downstream of UDT1 and GAMYB, but upstream of TDR1 and EAT1 in pollen development (PubMed:24894043). {ECO:0000269|PubMed:24755456, ECO:0000269|PubMed:24894043}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1068500.0AK106850.1 Oryza sativa Japonica Group cDNA clone:002-118-A11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645943.10.0transcription factor TIP2
SwissprotQ5JNS00.0TIP2_ORYSJ; Transcription factor TIP2
TrEMBLA0A0E0MV070.0A0A0E0MV07_ORYRU; Uncharacterized protein
STRINGORUFI01G13250.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.11e-34bHLH family protein