PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G09990.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 106aa    MW: 11683.6 Da    PI: 4.4973
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G09990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP77.44e-2419024104
              TCP  24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg.......kaaksaakskksqksa 104
                      ++++c a +F+L+ eLG+++d++t++WLlqqa+pai ++tgt++++  +    a++s s+  ++  +        +   +++++++q+++
  ORUFI01G09990.1   1 MPVLCVAWIFQLTWELGHKSDGETVQWLLQQAEPAIVAATGTGTIPDGHIsvLAAQSLSQFYHQVGSadaagqlPHPHHHHQHHQQQQED 90 
                      9*****************************************999995553333333333332222233333332222222222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.1E-18190IPR005333Transcription factor, TCP
PROSITE profilePS5136918.012139IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MPVLCVAWIF QLTWELGHKS DGETVQWLLQ QAEPAIVAAT GTGTIPDGHI SVLAAQSLSQ  60
FYHQVGSADA AGQLPHPHHH HQHHQQQQED GEDERYDGES DEESGQ
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0077895e-98AC007789.1 Oryza sativa BAC OSJNBa0049B20 genomic sequence, complete sequence.
GenBankAP0030745e-98AP003074.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0004G10.
GenBankAP0149575e-98AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009408353.15e-23PREDICTED: transcription factor TCP20-like
SwissprotQ9C5183e-21TCP8_ARATH; Transcription factor TCP8
TrEMBLA0A0E0MTU43e-70A0A0E0MTU4_ORYRU; Uncharacterized protein
STRINGORUFI01G09990.14e-71(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28643269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.11e-23TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]