PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.6.118.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C2H2
Protein Properties Length: 668aa    MW: 74273 Da    PI: 6.8963
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.6.118.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002322344223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  +C+ Cg+++++ + L++H+++ +
  gw1.6.118.1 322 SCEVCGQVCKSAHGLRTHQNRwC 344
                  6******************9977 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF475762.62E-2625146IPR001715Calponin homology domain
Gene3DG3DSA:1.10.418.108.1E-3227146IPR001715Calponin homology domain
PROSITE profilePS500219.53728122IPR001715Calponin homology domain
PfamPF003072.4E-633117IPR001715Calponin homology domain
SMARTSM0035541321341IPR015880Zinc finger, C2H2-like
SMARTSM0035587383403IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.1E-4384403IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355200422448IPR015880Zinc finger, C2H2-like
SMARTSM003550.092486509IPR015880Zinc finger, C2H2-like
SuperFamilySSF552983.77E-15550666IPR013813Endoribonuclease L-PSP/chorismate mutase-like
Gene3DG3DSA:3.30.1330.401.4E-14550668IPR013813Endoribonuclease L-PSP/chorismate mutase-like
PfamPF010429.7E-11556661IPR006175YjgF/YER057c/UK114 family
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
TPRARIDAST RATPTSSSQA ARTPSSNTMG RLELVSWLNH ALRSDYASVQ ECGDGVAYCQ  60
LLDALHPGAV PLHRLDFNAR YLADNERNVR VLSQTMRSLG LPVEVDYEAL ASGKFIENNN  120
LLRWFHSYVA KNGMGALEAY DAYAARVRAQ RVKAHASTEM VRALTADDAD GDETDIESQD  180
DDDGPRSGEA RVRDADAKDN ETSDSDEDHD EDGARNRRAS LKSPETLFDD VSNAEGQRTS  240
QGAALQGRKR RTAQRPQRYA TSEDGAQEDD PDLALTGYYC QCGRTFATEV GLKIHRKRSS  300
CGAPLVDTRG NGAAQDASTK VSCEVCGQVC KSAHGLRTHQ NRWCKGRRAT NTNTVPQGAA  360
VASAEGTMFT TRKARRCVVR ETHNCSFVGK TFDELVEHMQ TVHNVILNTR APTELEMDIG  420
QRWCLHCPPD SFIAKNYRGL CTHYRKVHNI ILIEEVAETD GDEDVASGAA IHAKHAKTIE  480
LMSDQTDCTE CDYKSKTHKG LKTHMRMSHS MYVTSIAPPP RRRSSTKRRR DRSVTPAREH  540
VALAATIERI NPRRYDFSPI TTFGRLIWLA GISASDEVDP RFPGQMRQAL SNLVELLVEA  600
GTDVLHLVDV TIYLADIRDL YEAAEVWNEF FTDLGIPREQ RPVRNVLQSL VSKDKILKVE  660
LYAQAVLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2r8u_A3e-162519311181Microtubule-associated protein RP/EB family member 1
2r8u_B3e-162519311181Microtubule-associated protein RP/EB family member 1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP543744