PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pm.chr_4_#_35
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family ERF
Protein Properties Length: 416aa    MW: 42909.6 Da    PI: 10.4212
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pm.chr_4_#_35genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.99.4e-223383155
                     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                            s+y+GVr+++ +g+W+AeIrdp   + r +r +lg+f+taeeAa+a++aa++ ++g
  fgenesh1_pm.chr_4_#_35 33 SQYRGVRQRP-WGSWAAEIRDP---N-RgARLWLGTFDTAEEAARAYDAAARHIRG 83
                            78********.**********8...3.35***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-223391IPR016177DNA-binding domain
PfamPF008476.5E-153383IPR001471AP2/ERF domain
CDDcd000181.77E-193391No hitNo description
PROSITE profilePS5103223.9333491IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-333491IPR001471AP2/ERF domain
SMARTSM003806.6E-383497IPR001471AP2/ERF domain
PRINTSPR003672.7E-113546IPR001471AP2/ERF domain
PRINTSPR003672.7E-115773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MDARGSEGEG TDGERARTQG LKGDKASKKA TTSQYRGVRQ RPWGSWAAEI RDPNRGARLW  60
LGTFDTAEEA ARAYDAAARH IRGPNAKTNF QLAPGEEPPP FVLPEPPSGG RGGGGGGRGR  120
GVDTGFPSTT LGGAGPSSRG PNVLKKQKPA GKDAKGVPST IYGFGPGSTE KSSSTVPKRG  180
SINFGSGTDL SALVNANLAL ANQNLASAGS ARKDPENSFV KLFQNGSVGG TPSSTGGSPL  240
IMPESMELRG GMSPRTNAEI PVINGKRDRG PSSAFFGTSF GVAGSFGSMF PPEMALSSTP  300
DGGEGMNFYG EFSMSPKDRS THGSDHFPVG SLGTLRDLDD ALPAVGSLDL GSPVDLDSMM  360
NSLPKNSSGK VQTVTSILGK SNKKKDQDSP LGRASTRTTR ESRSKSALDA MAALK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1830901071Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108116GGRGGGGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005843e-87CP000584.1 Ostreococcus lucimarinus CCE9901 chromosome 4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022838868.11e-145DNA-binding domain
TrEMBLA0A090M4Z91e-144A0A090M4Z9_OSTTA; DNA-binding domain
TrEMBLA0A454XSF61e-144A0A454XSF6_OSTTA; Uncharacterized protein
STRINGA0A090M4Z91e-145(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1321540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.12e-18cytokinin response factor 1