PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G15550.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 394aa    MW: 41629.2 Da    PI: 4.3699
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G15550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.4e-1951100255
              AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  OPUNC12G15550.1  51 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 100
                      789******.7*********33....35**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.94E-3050107No hitNo description
SMARTSM003804.6E-3551114IPR001471AP2/ERF domain
PfamPF008479.6E-1451100IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-1951108IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-2751107IPR001471AP2/ERF domain
PROSITE profilePS5103219.55951108IPR001471AP2/ERF domain
PRINTSPR003675.6E-85263IPR001471AP2/ERF domain
PRINTSPR003675.6E-87490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MATARVASPS TDRKRKASED DIDAAYDVGA AVLTSPPSFA SAPQPARGRK RFVGVRQRPS  60
GRWVAEIKDT IQKIRVWLGT FDTAEEAARA YDEAACLLRG ANTRTNFWPR PSPPPAAAVV  120
PPPENTTTTT TPALPSKVTN LLLLRLKARN QQLVNDDVAA APQEAGALLQ LQQTPASCQE  180
VFVHGHSEEY AFHVDDFLSD ECSNEHSGDS SLGLDEEEEV EEEEEDELDF QFMDVAPAAS  240
AAGGLGGEGA LCSPFEMVAA ELGGAVEAAA AHDAMRQMDY ERKISASLYA LSGVSECLRI  300
RAAAGATAAA ARDHLTGLRE ACRKKQKFAA AAAAPPPQQQ EPSPPPREAE AAAEDGMGCQ  360
EESSGGGMSE TASGGDGDVL LWSSLDLAPI CHMA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619512.21e-156ethylene-responsive transcription factor ERN1
TrEMBLA0A0E0MP240.0A0A0E0MP24_ORYPU; Uncharacterized protein
STRINGOPUNC12G15550.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54823052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.15e-22related to AP2 11