PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G03300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 265aa    MW: 29689.9 Da    PI: 7.495
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G03300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B395.92.7e-3036140198
                      EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.. 87 
                      f+k ltpsdv+k++rlv+pk++ae++     g + e++  l++edesg+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++ +   
  OPUNC12G03300.1  36 FEKPLTPSDVGKLNRLVIPKQHAERYfplsgGDSGEKGLLLSFEDESGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKHLDAGDVVHFERLRGlg 129
                      99****************************9555568889************************************************664433 PP

                      SEE..EEEEE- CS
               B3  88 sefelvvkvfr 98 
                       + +l+++ +r
  OPUNC12G03300.1 130 AGDRLFIGCRR 140
                      44455555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-4031146IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-3033127IPR015300DNA-binding pseudobarrel domain
CDDcd100171.94E-2835127No hitNo description
PfamPF023621.8E-2736140IPR003340B3 DNA binding domain
SMARTSM010196.9E-2236141IPR003340B3 DNA binding domain
PROSITE profilePS5086313.59236141IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MAMHPLAQGH PQAWPWGVAM YTNLHYHHHY EREHLFEKPL TPSDVGKLNR LVIPKQHAER  60
YFPLSGGDSG EKGLLLSFED ESGKPWRFRY SYWTSSQSYV LTKGWSRYVK EKHLDAGDVV  120
HFERLRGLGA GDRLFIGCRR RGESAPAVRV TPPAALNGGE QQPWSPMCYS TSGSSYDPTS  180
PANSYAYHRS VDQDHSDILH AGESQRDADA KSSSAASAPP PSRRLRLFGV NLDCGPEPEA  240
DQATAMYGYM HHQSPYTAVP NYWGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-50311413113B3 domain-containing transcription factor NGA1
5os9_B2e-50311413113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL9287580.0AL928758.3 Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618154.11e-168B3 domain-containing protein Os11g0156000-like
SwissprotQ53QI01e-132Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLA0A0E0MJU40.0A0A0E0MJU4_ORYPU; Uncharacterized protein
STRINGOPUNC12G03300.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.22e-55B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]