PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC10G16940.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 294aa    MW: 32057.3 Da    PI: 10.2098
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC10G16940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.71.6e-3037142199
                      EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld. 85 
                      f+kv tpsdv+k++rlv+pk++ae++        gg   ++  l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L +gD+v F +  
  OPUNC10G16940.1  37 FEKVVTPSDVGKLNRLVIPKQHAERYfpldaaaaGG---KGLVLSFEDRTGKAWRFRYSYWNSSQSYVMTKGWSRFVKEKRLGAGDTVSFGRGl 127
                      99*************************999876432...5678************************************************666 PP

                      SS.SEE..EEEEE-S CS
               B3  86 gr.sefelvvkvfrk 99 
                      g+  +++l++ ++r+
  OPUNC10G16940.1 128 GDaARGRLFIDFRRR 142
                      888999999999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-3931145IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-3034126IPR015300DNA-binding pseudobarrel domain
CDDcd100177.67E-2835123No hitNo description
PfamPF023626.4E-2837142IPR003340B3 DNA binding domain
SMARTSM010192.2E-2137143IPR003340B3 DNA binding domain
PROSITE profilePS5086314.35337143IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MEFTPIAPPT RVAGGEEDSE RGAAVAAWAV VEKEHMFEKV VTPSDVGKLN RLVIPKQHAE  60
RYFPLDAAAA GGKGLVLSFE DRTGKAWRFR YSYWNSSQSY VMTKGWSRFV KEKRLGAGDT  120
VSFGRGLGDA ARGRLFIDFR RRRQDAGTFM FPPTAAPSHS HHHHHHHQRQ LPLPSVPLCP  180
WRDYTAYGGY GYGGSTPASS RHVLFLRPQV PAAVVLKSVP VHVTASAVQE ATTTRPKRVR  240
LFGVNLDCPA MDDDDIAGAA SRTAASSLLQ LPSPSSSTSS STAGKRMCSL DLGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-56301421113B3 domain-containing transcription factor NGA1
5os9_B1e-56301421113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0741960.0AC074196.14 Oryza sativa chromosome 10 BAC OSJNBa0040D23 genomic sequence, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613852.11e-149putative B3 domain-containing protein Os10g0537100
SwissprotQ8LNN81e-150Y1071_ORYSJ; Putative B3 domain-containing protein Os10g0537100
TrEMBLA0A0E0MAR90.0A0A0E0MAR9_ORYPU; Uncharacterized protein
STRINGOPUNC10G16940.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.15e-52B3 family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]