PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G18420.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YB
Protein Properties Length: 164aa    MW: 17848 Da    PI: 4.6551
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G18420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB53.94.3e-1731126695
            NF-YB   6 rflPianvsrimkkvlPanak......iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                      ++lP a v r++k  l + a       + kda     e +  fi ++++ a+d c++ kr+tin+dd+l al ++ f ++vepl++ l+++r+ 
  OPUNC09G18420.1  31 EELPKAIVRRLVKDKLTQVAAggaeviVNKDAMSAFAESARIFIHYLSATANDMCKESKRQTINADDVLKALDEMEFPEFVEPLNTSLQEFRNK 124
                      67999*******998875442222333899**************************************************************97 PP

            NF-YB  94 eg 95 
                      ++
  OPUNC09G18420.1 125 NA 126
                      76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.5E-3227161IPR009072Histone-fold
PfamPF008083.4E-1132102IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471133.05E-2633159IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MAGEGGGSQA AEGAKSPAPP APASMAEAEV EELPKAIVRR LVKDKLTQVA AGGAEVIVNK  60
DAMSAFAESA RIFIHYLSAT ANDMCKESKR QTINADDVLK ALDEMEFPEF VEPLNTSLQE  120
FRNKNAARRS ETTQKKAEKR RKIDKESLPQ EQNDAADDIK ADED
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2426340.0AK242634.1 Oryza sativa Japonica Group cDNA, clone: J090023D18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006661566.12e-98PREDICTED: DNA polymerase epsilon subunit 3-like
TrEMBLA0A0E0M4Q21e-116A0A0E0M4Q2_ORYPU; Uncharacterized protein
STRINGOB09G26820.16e-98(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104143744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.12e-34nuclear factor Y, subunit B11