PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G08520.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 260aa    MW: 27532.2 Da    PI: 6.2836
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G08520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.19e-3678155381
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssss 81 
                       ++drhski T++g RdRR+Rls+++a+ fF+Lqd+LGfdk+skt++WLl+q+kpai+ l+++ssss+++  +++   +
  OPUNC09G08520.1  78 FRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRLADSSSSSQRHH-HVAATAA 155
                      689************************************************************66666222.1111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136934.92279137IPR017887Transcription factor TCP subgroup
PfamPF036345.7E-3479165IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MQHQQPPGGH LDQHHYDHFF SGHGQFNSET LEAVLCRPPR GADPAVPTTA AAAAAAAAAV  60
PAPRNGGAGG GRARKRPFRT DRHSKIRTAQ GVRDRRMRLS LDVARDFFAL QDRLGFDKAS  120
KTVDWLLTQS KPAIDRLADS SSSSQRHHHV AATAAGDTRM SSPASAERDD HIGDGSGKGG  180
GGDADKVRAR GGSRSVPMEL GCELGRLVPA PVLGEYYYEL AEMMSNNTGG EGDDDGDYDD  240
DGDFLDGLDG SATLPSISSL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0050931e-121AP005093.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1294_G06.
GenBankAP0149651e-121AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankEU7024071e-121EU702407.1 Oryza sativa Japonica Group putative TCP transcription factor (DP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611514.12e-96transcription factor TB1-like
TrEMBLA0A0E0M1360.0A0A0E0M136_ORYPU; Uncharacterized protein
STRINGOPUNC09G08520.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.17e-28TCP family protein