PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G06680.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 287aa    MW: 30480.9 Da    PI: 6.671
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G06680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.4e-21104153255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  OPUNC09G06680.1 104 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDQAAYRLRG 153
                      59******9.**********955...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.31E-30103163No hitNo description
SuperFamilySSF541714.71E-23104163IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.6E-33104163IPR001471AP2/ERF domain
SMARTSM003801.5E-35104167IPR001471AP2/ERF domain
PROSITE profilePS5103223.354104161IPR001471AP2/ERF domain
PfamPF008477.0E-15105153IPR001471AP2/ERF domain
PRINTSPR003672.4E-11105116IPR001471AP2/ERF domain
PRINTSPR003672.4E-11127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MAAAIDLSGE ELMRALEPFI RDASGSPPVC SQFSPTSPFS FPHAAAFAYG GGPAQPEFSP  60
AQIHYIQARL HLQRQAAQSS PLGPRAQPMK ASAAAATPPR PQKLYRGVRQ RHWGKWVAEI  120
RLPRNRTRLW LGTFDTAEEA ALAYDQAAYR LRGDAARLNF PDNAASRGPL HASVDAKLQT  180
LCQNIAAAKN AKKSTATASA SATATSSAPT SNCSSPSSDD ASSCLESADS SPSLSPSSAA  240
TTAETPATVP EMQQLDFSEA PWDEVAAFAL TKYPSYEIDW DSLLAAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-20103161463ATERF1
3gcc_A3e-20103161463ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612138.11e-150ethylene-responsive transcription factor RAP2-13
TrEMBLA0A0E0M0I00.0A0A0E0M0I0_ORYPU; Uncharacterized protein
STRINGOPUNC09G06680.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.15e-35ERF family protein