PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G03540.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 249aa    MW: 27399.3 Da    PI: 4.7193
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G03540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19105154356
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +grW++eIrdp+    + +r++lg+++ta eAa+a++a +++++g+
  OPUNC09G03540.1 105 YRGVRQRP-WGRWASEIRDPV----KgARVWLGTYDTAVEAARAYDAEARRIHGA 154
                      9*******.**********75....44*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.787104161IPR001471AP2/ERF domain
SMARTSM003804.3E-36104167IPR001471AP2/ERF domain
PRINTSPR003675.6E-11105116IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-22105162IPR016177DNA-binding domain
CDDcd000181.28E-28105160No hitNo description
PfamPF008479.0E-12105153IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-31105161IPR001471AP2/ERF domain
PRINTSPR003675.6E-11127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MCGGAVTPNN YDKPPAPAAW RRRSGQPPSE WGAATKKNKK KKRCGGGGDD DWEAAFREFV  60
AGDDDDEEVG VDMFPSGAGT MERATTEVAV VERPRRRRVR RSYPYRGVRQ RPWGRWASEI  120
RDPVKGARVW LGTYDTAVEA ARAYDAEARR IHGAKARTNF PPDEPPPPPA LCFLLDDDVA  180
ARGNIQESSA PDSVVSASTT SSTVSWEVSD ELILLECCSD DVMDSLLAGF DLNREELTEE  240
GHETSNLVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-18105161663ATERF1
3gcc_A1e-18105161663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12042RRRSGQPPSEWGAATKKNKKKKR
29299RPRRRRVR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4539641e-173DQ453964.1 Oryza sativa (indica cultivar-group) clone BAC 101O9 chromosome 9 map Sub1 locus, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610635.17e-64ethylene-responsive transcription factor 1-like
TrEMBLA0A0E0LZD00.0A0A0E0LZD0_ORYPU; Uncharacterized protein
STRINGOPUNC09G03540.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP152001318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.14e-14ERF family protein