PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G15450.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 447aa    MW: 48328.2 Da    PI: 10.3184
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G15450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57399.72.6e-31187286298
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifels 92 
                      ++ r+w+ eDe+++L++li+++ak+g+   +s+d+ ++++++++++ +k+s++ql++K+rrLK+K++   ++ +k+g++p++ +ehd++++els
  OPUNC08G15450.1 187 RPPRVWNPEDEVTILRALISYRAKNGVlpGSSQDTGKLHNMIRGQLTVKASTTQLSDKVRRLKHKYNLILTRvTKNGRDPDLPTEHDREVYELS 280
                      578************************888999************************************999899******************* PP

           DUF573  93 kkiWgs 98 
                      kk+Wg+
  OPUNC08G15450.1 281 KKVWGT 286
                      ****95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.0E-27189285IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MAPKRPAAAS GSASEASDGE AGGPARRRSP SRSRSPSRSA SPSRSRSKTP PPNAAVLSST  60
PASAAVDFVA ASDSDAGADA DARLASPRRS RERSPRLHSD SDNSAAATAE AVEASAAAFD  120
DGDDEGNATP PPRSRRSSRV EATGIKPISS RPMDASRRPA AASSQSQRRS KRPRSSPTQH  180
SPEQHKRPPR VWNPEDEVTI LRALISYRAK NGVLPGSSQD TGKLHNMIRG QLTVKASTTQ  240
LSDKVRRLKH KYNLILTRVT KNGRDPDLPT EHDREVYELS KKVWGTKSGG VGAGSGGDRV  300
YENAEVVQSD EEQGSRDDSD EDMESGWDDH DHRNRRLKAI VIANGNGNAV TGGRSVHGNG  360
SGKGDVADKG KDMYPYLWEA VEELSKEHPS GTAFRKAFGV LDGSRARAME EKLNRFRLSE  420
IRQQLRRMDL MKETIKMVLD ALEGSDL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648426.10.0PREDICTED: mediator-associated protein 1
TrEMBLA0A0E0LVR90.0A0A0E0LVR9_ORYPU; Uncharacterized protein
STRINGORGLA08G0154000.10.0(Oryza glaberrima)
STRINGORGLA09G0184000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.17e-14DNA-binding storekeeper protein-related transcriptional regulator