PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G13980.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 126aa    MW: 13124.9 Da    PI: 8.443
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G13980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer95.54.2e-303085258
      ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                      +vrY eC++NhAa++GghavDGC+Ef+++ geegt  al+CaACgCHR+FHRr v+
  OPUNC08G13980.1 30 GRVRYGECRRNHAARMGGHAVDGCREFLAE-GEEGTGGALRCAACGCHRSFHRRVVV 85
                     589**************************8.999********************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576128No hitNo description
PfamPF047702.1E-283284IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.9E-233382IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.7493483IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-104080IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MMKRMVILRR CQPPPPQPQP AAAVVGGCCG RVRYGECRRN HAARMGGHAV DGCREFLAEG  60
EEGTGGALRC AACGCHRSFH RRVVVVQQCC GCDAAAATAS AAAAGGWEWR DCSPQSSSSA  120
SSTTAS
Functional Description ? help Back to Top
Source Description
UniProtInhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0051591e-144AP005159.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0016C11.
GenBankAP0149641e-144AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649658.14e-54mini zinc finger protein 4
SwissprotQ0J5F84e-55MIF4_ORYSJ; Mini zinc finger protein 4
TrEMBLA0A0E0LV864e-84A0A0E0LV86_ORYPU; Uncharacterized protein
STRINGOPUNC08G13980.17e-85(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143134120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74660.11e-14mini zinc finger 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]