PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G20890.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 348aa    MW: 37821.3 Da    PI: 4.4554
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G20890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-19110160155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++y+G+r+++ +g+W+AeIrdp++     r++lg+fgtaeeAa a++  +++++g
  OPUNC07G20890.1 110 TRYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFGTAEEAAMAYDVEARRIRG 160
                      68********.**********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.67E-29110167No hitNo description
PfamPF008472.3E-12110160IPR001471AP2/ERF domain
SMARTSM003808.2E-36111174IPR001471AP2/ERF domain
PROSITE profilePS5103223.749111168IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-21111169IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-31111169IPR001471AP2/ERF domain
PRINTSPR003673.6E-11112123IPR001471AP2/ERF domain
PRINTSPR003673.6E-11134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MCGGSILGDL YSPVRRTVNA SDLWGDTGKG KDGGDSLKRK GSSWDFDVDC DDDDDDFEAD  60
FEEFEDDSGD DDDDVGFGHD DQESDMNSLK LAGFSATKLG GLGSSRKRKT RYRGIRQRPW  120
GKWAAEIRDP RKGVRVWLGT FGTAEEAAMA YDVEARRIRG KKAKVNFPDP AAATAAPKRP  180
RRSSASTKHS SQPQRQLKAK SSSSSPSPVS MNVSDGVSKS NNNRVSSAGS STDDAAAIDD  240
AVKLELLSET NPSLPLPMAA AWLDAFELND LDGSRCKDDA AGAFDHQIHK AEAVVADDFA  300
FYDPSYMQLG YLDQGNSYEN IDALFGGEAV NIGGLWSFDD MPMEFRAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20112168663ATERF1
3gcc_A2e-20112168663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104109SRKRKT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0610470.0AK061047.1 Oryza sativa Japonica Group cDNA clone:006-205-F01, full insert sequence.
GenBankAK0670600.0AK067060.1 Oryza sativa Japonica Group cDNA clone:J013090P08, full insert sequence.
GenBankAK1093600.0AK109360.2 Oryza sativa Japonica Group cDNA clone:006-206-B03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647923.11e-151ethylene-responsive transcription factor 1-like
TrEMBLA0A0E0LND60.0A0A0E0LND6_ORYPU; Uncharacterized protein
STRINGOPUNC07G20890.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145602123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.17e-34ethylene-responsive element binding protein