PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G09160.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 1457aa    MW: 163495 Da    PI: 6.571
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G09160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B388.74.8e-28148236185
                      EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                      f+kv tpsdv+k++rlv+p+k+ae +       + e+++ l++ed+ g+ W+++++y+++s++yv+tkGW++Fv++n+L++gD+v F++ 
  OPUNC07G09160.1 148 FDKVVTPSDVGKLNRLVIPRKHAECYfprdvA-SDERGVVLSFEDRAGKPWRFRYSYWNGSRSYVMTKGWSRFVRENRLNAGDTVSFYRG 236
                      89*********************888**9964.446899*************************************************54 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-37141247IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-28145247IPR015300DNA-binding pseudobarrel domain
CDDcd100171.06E-24146235No hitNo description
PROSITE profilePS5086314.494148251IPR003340B3 DNA binding domain
PfamPF023625.8E-25148239IPR003340B3 DNA binding domain
SMARTSM010193.4E-23148252IPR003340B3 DNA binding domain
SuperFamilySSF520473.45E-31446638No hitNo description
Gene3DG3DSA:3.80.10.101.8E-27458634IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM00367380481508IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM00367610529556IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM0036753577601IPR006553Leucine-rich repeat, cysteine-containing subtype
SuperFamilySSF525407.45E-36653898IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009311.4E-33674926IPR002182NB-ARC
PRINTSPR003642.9E-10678693No hitNo description
PRINTSPR003642.9E-10748762No hitNo description
PRINTSPR003642.9E-10845859No hitNo description
SuperFamilySSF520581.11E-309611184IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.102.8E-1910441172IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520581.11E-3012241366IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.102.8E-1912371352IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM003671913411370IPR006553Leucine-rich repeat, cysteine-containing subtype
Gene3DG3DSA:3.80.10.106.2E-413531436IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003642.9E-1014021418No hitNo description
SMARTSM0036754014041429IPR006553Leucine-rich repeat, cysteine-containing subtype
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1457 aa     Download sequence    Send to blast
MSGYWRRRRS GKPADVDPAG NPSGGYCREG EKREQAEILS VRPRNTSGGF SDAEYSYGSN  60
SVGSFAGGLG LDLSLVPTPP ASSSLHTSGS RRASGPSDSD QISTRKTSGR WGWGWGRTRR  120
RPQAPGDADD DVGGGGAAKV IIEKEHMFDK VVTPSDVGKL NRLVIPRKHA ECYFPRDVAS  180
DERGVVLSFE DRAGKPWRFR YSYWNGSRSY VMTKGWSRFV RENRLNAGDT VSFYRGASEV  240
TRDRLFIHSK RQMQDANLAG GGGTNILPHL GYAGRQGHIN LLFQLLVQVR TMVSSFGEAG  300
SPPPNAPLAT VQFFTYKALK DCLQDLHYYS LLSMVGRNHK SQSRSARFVC GVDAKIRDTI  360
PTLDALIQFR SLSLSDPALQ IYGARTVSSH CILLCRGVLG IMGVRCSENM EEEQRMVQVP  420
AFDDLKYPGH GKITRMEEQT MPLSLANPIY LLPTAITNLL YLDLSNCTDI VQLPPSLGSS  480
LHKLSALNLS CCYSLHALPD SLVCLYDLQI LLLSFCHNLQ NLPVPFGDLS NLRLLDLSGC  540
HSLILLPDSF VNLGSLENLN LSDCISLMGI PQQFGNLRKL EYLNFAGCYI VDLDVYCLSK  600
LVNLKCLTLS HHTDIKDFPY SFTDLTRHLD LSRWWKNNWV HTQCNLKSYR CHQQSIINKL  660
LSDGSDEGDI TSEQSLTSIC IFGESGTGKT ELLHEIYNDQ MILEGFHLRI WINMCDKKRL  720
LEKIIEFTTC AYCYDAPSSI LEETVREELN GKRFLLVLND ADIEKQCFWT DVWKLANVGA  780
AGSAFIVTTR SKEVASVFGA METYDMNILS KEECFMVFQE HAGCGLDINN YHELTKVGWK  840
IVEKCGSNPL CIKALSGLLC HSETALSEID SLVGGIVPAL RLCYDLLPSC LNQCFKFCSL  900
FPKDYVFVKH HIIQLWISQG FVYPEEDSHL EDTGLQYFNE LFCRSFFQHC PFSNDHEDKF  960
VMHELFHDLA RSVSKDESFS SEEPFFSLHE NICHLSLVIS DSNTVVLTKE HRHLQSLMVV  1020
RRSASEYSSS FVPLLKILGL NDLLMKCGFL RALNLSCTTI VDLPGSIGMM KHLRFLALNN  1080
TKIKSLPTEI GQLNTLQTLE LKDCCCLIEL PESTKNLMKL RHLDVQKELG NIHVSMPSGL  1140
GQLTDLQTLT VFNIGDDLSH CSIRDLKNLS GLRGHVHITG LQNITAGDDA KEENLVGKQF  1200
LQALTLEWCC SSEEMEDESD KEIANQVLQN LQPNTSIQEL AIQNYPGNLF PNWIKDSCLC  1260
MLVSITIDNS QDCNEIPYLG DLPCLKFLFI QKMYAVENFG QRSNSLTTDG KDAPRFPSLE  1320
ILNLWEMYSL QFWNGTRYGD FPQLHRLSIS RCPKLSNLPP LISLVYLSLH CGDQLPALSE  1380
FPSLKSLKIE GFQKLKSVSF CPEMPMLQKL EISDCKELVS IDVPLLSVSN LKVVRCPKLH  1440
FGGSSLEGCL MWEKFKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-441412521113B3 domain-containing transcription factor NGA1
5os9_B5e-441412521113B3 domain-containing transcription factor NGA1
6j5t_C3e-416711267177771Disease resistance RPP13-like protein 4
6j5t_F3e-416711267177771Disease resistance RPP13-like protein 4
6j5t_G3e-416711267177771Disease resistance RPP13-like protein 4
6j5t_L3e-416711267177771Disease resistance RPP13-like protein 4
6j5t_O3e-416711267177771Disease resistance RPP13-like protein 4
6j5u_A3e-416711267177771Disease resistance RPP13-like protein 4
6j5v_A3e-416711267177771Disease resistance RPP13-like protein 4
6j5w_A3e-416711267177771Disease resistance RPP13-like protein 4
6j6i_C3e-416711267177771Disease resistance RPP13-like protein 4
6j6i_F3e-416711267177771Disease resistance RPP13-like protein 4
6j6i_G3e-416711267177771Disease resistance RPP13-like protein 4
6j6i_L3e-416711267177771Disease resistance RPP13-like protein 4
6j6i_O3e-416711267177771Disease resistance RPP13-like protein 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2890240.0AK289024.1 Oryza sativa Japonica Group cDNA, clone: J090090I16, full insert sequence.
GenBankAK3185810.0AK318581.1 Oryza sativa Japonica Group cDNA, clone: J090090I16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644837.10.0uncharacterized protein LOC4342906 isoform X1
TrEMBLA0A0E0LJ930.0A0A0E0LJ93_ORYPU; Uncharacterized protein
STRINGOPUNC07G09160.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125771216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.18e-45B3 family protein