PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G03260.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 432aa    MW: 45976.8 Da    PI: 8.1519
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G03260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.41.5e-39541962132
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssasec....eaes 77 
                       g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LG+d++sk+ieWL+++a +ai++l+++                     +     + +
  OPUNC07G03260.1  54 SGGKDRHSKVYTAKGIRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIKAAAAAIDKLPSLdtasfpthpasaaaA------AitsaPPLT 141
                      689*************************************************************888775554322220......122222222 PP

              TCP  78 ssssasnsssg.....kaaksaakskksqksaasalnlak.esrakarararertrekmri 132
                      + s       +     ++ +++ +s+ s++s+ s+l+l++ esr kar+rarer++   ++
  OPUNC07G03260.1 142 HASD------AdadqqQQLTKSGCSSTSETSKGSVLSLSRsESRVKARERARERSAAAASK 196
                      2222......122222566777799999999***********************9877665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.2E-4055193IPR005333Transcription factor, TCP
PROSITE profilePS5136932.18956114IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.295176198IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MELGGSNNKR GRVTEEEDDG GEPEAKRHQN QQLLPWAHQQ QHPASRIYRV SRASGGKDRH  60
SKVYTAKGIR DRRVRLSVST AIQFYDLQDR LGYDQPSKAI EWLIKAAAAA IDKLPSLDTA  120
SFPTHPASAA AAAITSAPPL THASDADADQ QQQLTKSGCS STSETSKGSV LSLSRSESRV  180
KARERARERS AAAASKDAGD DAATATATAP ASSQAASFTE LLTGMAAANA APADHKQQAW  240
QPMTVAAATA DYIGFAAAHA HPRKSGAGHH SAMPHTFASP APHLANITPI AMAPTQHFTL  300
TPAAAAEHHA EMTHFSFDHF MPVQAAAAAA STPAGGDYNL DFSMSSGLVG VHSRGTLQSN  360
SQSHLSSHHH HHHHHHQQQQ QLQRLSAPLD APNIPFLFSP APAPTAADTQ FAAALQLWDG  420
FRHADIKEKG KH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-3161115155Putative transcription factor PCF6
5zkt_B4e-3161115155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037040.0AP003704.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1048_C10.
GenBankAP0061630.0AP006163.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:B1364A02.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644886.10.0transcription factor PCF6
TrEMBLA0A0E0LH840.0A0A0E0LH84_ORYPU; Uncharacterized protein
STRINGOPUNC07G03260.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.29e-36TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2