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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC06G10200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CO-like | ||||||||
Protein Properties | Length: 383aa MW: 42076.8 Da PI: 4.7856 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.3 | 1e-05 | 24 | 66 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 r C+ ++ + +C+ + +lC++C H H++v OPUNC06G10200.1 24 RPCDGCGAAPSVVYCRADAAYLCASCDARVHAAncvvsrHERV 66 67**************************999656777777765 PP | |||||||
2 | zf-B_box | 26.7 | 1.2e-08 | 66 | 111 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ l C+ + lC C ++ H+ H++vp+ OPUNC06G10200.1 66 VHVCEACERAPAALACRADAAALCVACDVQVHSAnplarrHQRVPV 111 689*****************************66899999*99986 PP | |||||||
3 | CCT | 66.4 | 8e-23 | 314 | 357 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRYkeK+k RkFeK+irY++RKa+Ae RpR+KGrF+k++ OPUNC06G10200.1 314 REARVLRYKEKKKARKFEKTIRYATRKAYAEARPRIKGRFAKRS 357 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 4.7E-5 | 21 | 68 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.17E-8 | 24 | 66 | No hit | No description |
PROSITE profile | PS50119 | 9.513 | 26 | 68 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 11.291 | 64 | 111 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.0E-7 | 66 | 111 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.0E-9 | 69 | 111 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 7.3E-17 | 314 | 356 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.281 | 314 | 356 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048576 | Biological Process | positive regulation of short-day photoperiodism, flowering | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MNYNFGGNVF DQEIGEAGSC PWARPCDGCG AAPSVVYCRA DAAYLCASCD ARVHAANCVV 60 SRHERVHVCE ACERAPAALA CRADAAALCV ACDVQVHSAN PLARRHQRVP VVPLPAVAIP 120 AASVLAEAVA TTTVLGDKDE EVDSWLLLSK DSDNNNSNNN NNNNNNNNNN NGMYFGEVDE 180 YFDLYYDNRI ENNQQQYGMH EQQEQQQQEM QKEFAEKEGS ECVVPSQITM LSEQQHSGYG 240 VVGADQAVSM TAGVSAYTDS ISNSISFSSM EVGIVPDSTV IDMPNSSILT PAGAINLFSD 300 PSLQMPFHFN SMDREARVLR YKEKKKARKF EKTIRYATRK AYAEARPRIK GRFAKRSDVE 360 IEVDQMFSTA ALSDGSYGTV PWF |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ581043 | 0.0 | FJ581043.1 Oryza punctata clone OP_Ba0017E18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641799.1 | 0.0 | PREDICTED: zinc finger protein HD1 | ||||
Swissprot | Q9FDX8 | 0.0 | HD1_ORYSJ; Zinc finger protein HD1 | ||||
TrEMBL | A0A0E0LAD7 | 0.0 | A0A0E0LAD7_ORYPU; Uncharacterized protein | ||||
STRING | LOC_Os06g16370.1 | 0.0 | (Oryza sativa Japonica Group) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5622 | 31 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02380.1 | 1e-51 | CONSTANS-like 2 |