PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G07470.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 346aa    MW: 36463.9 Da    PI: 7.1939
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G07470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.5e-20172220355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++a+ +l+g
  OPUNC06G07470.1 172 YRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAALAYDKAAFRLRG 220
                      9******9.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.0E-37171234IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-22171229IPR016177DNA-binding domain
PROSITE profilePS5103223.446171228IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-32171229IPR001471AP2/ERF domain
CDDcd000189.80E-31172228No hitNo description
PRINTSPR003676.0E-11172183IPR001471AP2/ERF domain
PfamPF008473.2E-13172220IPR001471AP2/ERF domain
PRINTSPR003676.0E-11194210IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MAAIDLYKYQ LSSSSSSSSS DQELMKALEP FIRSASPTST STSISTPFSY SSSSISTTTP  60
FSYSSPLPQE SYYVPPSSSY AAIPPPPPAT ATATSFSELP PLPPSSSSIA SPANAAAVGL  120
AHLGPEQIQQ IQVQFLMQQR GMAASAAAYL GPRAQPMKQA GVAPSAGGGK MYRGVRQRHW  180
GKWVAEIRLP KNRTRLWLGT FDTAEDAALA YDKAAFRLRG DAARLNFPTL RRGGAHLAGP  240
LHASIDAKLT AICHSLATAP PAASSKKVAT AAHPDSPKGS ASTTTTTSEG DESAISACSP  300
PLPPPPPPAL PEMANLDFTE APWDESDAFH LYKCPSWEID WDSILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-22169228363ATERF1
3gcc_A3e-22169228363ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644288.11e-137ethylene-responsive transcription factor RAP2-13
SwissprotQ8H1E43e-59RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A0E0L9G90.0A0A0E0L9G9_ORYPU; Uncharacterized protein
STRINGOPUNC06G07470.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-45related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]