PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G01470.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 625aa    MW: 66660.7 Da    PI: 6.2449
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G01470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS394.61.1e-1202236021374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPil 91 
                      lv++L++cA+ +s+g++e+a+ +Larl e+asp+g +pm+R+aayfteALa r++r++++++++ pp+e +++    ++ ++al++++ ++Pi+
  OPUNC06G01470.1 223 LVRALTACADSLSAGNHEAANYYLARLGEMASPAGpTPMHRVAAYFTEALALRVVRMWPHMFDISPPRELTDDAfsGDDDAMALRILNAITPIP 316
                      6899******************************************************************998898999*************** PP

             GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                      +f h+t N+ +l+++eg+ervH+iDfdi+qGlQWp Llq+La+R+ +p+++RiTgvg+    s++el+etg rLa++A++lg+ fef++ v++r
  OPUNC06G01470.1 317 RFLHFTLNERLLREFEGHERVHVIDFDIKQGLQWPGLLQSLAARAVPPAHVRITGVGE----SRQELQETGARLARVAAALGLAFEFHA-VVDR 405
                      **********************************************************....9**************************.7*** PP

             GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsl.eaklpr 277
                      led++l++L+vk+gE++aVn+vl +hrll++++  +   +++L l +s+ + ++ + e+e d  ns+++ +rf++al+yy+a fd++ +++lp+
  OPUNC06G01470.1 406 LEDVRLWMLHVKRGECVAVNCVLTIHRLLRDDTGAAL--TDFLGLARSTGAAILLLGEHEGDGlNSGRWEARFARALRYYAAAFDAVdAVGLPE 497
                      *****************************88777766..99*********************99***********************9999*** PP

             GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveee........sgslvlgW 362
                      +s +r+k E++ ++rei+n+va egaer+erhe+++ Wr+r+e+  GFk++ ++e++a+q +++ r+++ d y+v+ +         ++l+l W
  OPUNC06G01470.1 498 TSPARAKAEEM-FAREIRNAVAFEGAERFERHESFAGWRRRMEDgGGFKNAGIGEREAMQGRMIARMFGPDKYSVQAQgsggggggGEALTLRW 590
                      ***********.*******************************9679**********************888****888899998777888*** PP

             GRAS 363 kdrpLvsvSaWr 374
                       d+pL++v+aW+
  OPUNC06G01470.1 591 LDQPLYTVTAWT 602
                      ***********6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.09197574IPR005202Transcription factor GRAS
PfamPF035143.7E-118223602IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MLAGCSFSSS RHQMSTAQRF DIVPCGFSKR GNRGDGAAPR VAGDARSGTT TCSFRTHPAP  60
PVTQSVSWGA KPEPGGNGAG AAGGVWERNR AVKRAHDEDA VEEYGPIVRA KRTRMGGDGD  120
EVWFHQSIAG TMQATAAGEG EEAEEEKVFL VPSAAAFPHG MAAAGPSLAA AKKEEYSKSP  180
SDSSSSSGTD GGSSAMMPPP PPVFDARNGV PAPGQAEQEA LELVRALTAC ADSLSAGNHE  240
AANYYLARLG EMASPAGPTP MHRVAAYFTE ALALRVVRMW PHMFDISPPR ELTDDAFSGD  300
DDAMALRILN AITPIPRFLH FTLNERLLRE FEGHERVHVI DFDIKQGLQW PGLLQSLAAR  360
AVPPAHVRIT GVGESRQELQ ETGARLARVA AALGLAFEFH AVVDRLEDVR LWMLHVKRGE  420
CVAVNCVLTI HRLLRDDTGA ALTDFLGLAR STGAAILLLG EHEGDGLNSG RWEARFARAL  480
RYYAAAFDAV DAVGLPETSP ARAKAEEMFA REIRNAVAFE GAERFERHES FAGWRRRMED  540
GGGFKNAGIG EREAMQGRMI ARMFGPDKYS VQAQGSGGGG GGGEALTLRW LDQPLYTVTA  600
WTPAGDGAGG STVSASTTAS HSQQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-382236014374GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankAP0028380.0AP002838.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0038F22.
GenBankAP0011680.0AP001168.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone:P0425F02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642886.10.0PREDICTED: scarecrow-like protein 28
RefseqXP_015642887.10.0PREDICTED: scarecrow-like protein 28
TrEMBLA0A0E0L7870.0A0A0E0L787_ORYPU; Uncharacterized protein
STRINGORGLA06G0016600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64043455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-125GRAS family protein