PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G24910.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 163aa    MW: 18304.3 Da    PI: 10.1316
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G24910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.58e-142441055
              AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +k+g+WvAeIr+p +   r+r++lg++ t+  Aa+a++ a  +l+g
  OPUNC04G24910.1  2 RKWGKWVAEIREPHK---RTRIWLGSYATPVAAARAYDTAVFYLRG 44
                     46**********732...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.1E-28158IPR001471AP2/ERF domain
CDDcd000184.99E-22153No hitNo description
PROSITE profilePS5103219.19152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-25153IPR001471AP2/ERF domain
PfamPF008479.5E-8244IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18253IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MRKWGKWVAE IREPHKRTRI WLGSYATPVA AARAYDTAVF YLRGRSARLN FPEEISSLAS  60
LSEGGGAGEP REPDGGTLSA ASIRKKAIEV GSRVDALQTG MMVAPTHHRE RQKHHHHHHH  120
PHLQPHGEEQ HHHEQKHQRT AWSGRAKNPD LNQAPSPESS DAE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00276DAPTransfer from AT2G23340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7323350.0AL732335.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0721B11, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637236.11e-83ethylene-responsive transcription factor ERF008
SwissprotO221749e-46ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A0E0KVZ71e-115A0A0E0KVZ7_ORYPU; Uncharacterized protein
STRINGOPUNC04G24910.11e-116(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.12e-38DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]