PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G19790.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 304aa    MW: 32765.9 Da    PI: 4.8783
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G19790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.71.2e-35111022102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y ++ed++++e+isw+++g++fvv+ + efa+++Lpk+Fkhsnf+SFvRQLn+YgFkkv  ++         weF+++ F++g+k+ll 
  OPUNC04G19790.1  11 FLTKTYAMVEDPSTDETISWNDSGTAFVVWRPAEFARDLLPKHFKHSNFSSFVRQLNTYGFKKVVADR---------WEFANDCFRRGEKHLLG 95 
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                       i+r+k 
  OPUNC04G19790.1  96 GIQRRKG 102
                      ****986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.8E-567100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.6E-387100IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.8E-358100IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.5E-3111100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-191134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-194961IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405074IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-196274IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MASPVAGTPP FLTKTYAMVE DPSTDETISW NDSGTAFVVW RPAEFARDLL PKHFKHSNFS  60
SFVRQLNTYG FKKVVADRWE FANDCFRRGE KHLLGGIQRR KGSGTGGAAA PAGGIPTAIP  120
ISSPPTSSGG EPAVSSSPPR GAAGIAAGVS GAVAELEEEN ARLRRENARL ARELARARRV  180
CDGVRRLVSR YDHDHGGGEE EGGEGDVKPM LFGVAIGGKR SREENGEDEE EEDDEGADED  240
GEDEEVEEED DDERERHAAR RVPVREGKVR RTELSDLDVL ALSVRAAAAA RPGGASRDRK  300
SSVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-27110311123Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3444830.0AY344483.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636018.11e-150PREDICTED: heat stress transcription factor B-2a
SwissprotQ7XRX31e-152HFB2A_ORYSJ; Heat stress transcription factor B-2a
TrEMBLA0A0E0KU310.0A0A0E0KU31_ORYPU; Uncharacterized protein
STRINGBGIOSGA016941-PA1e-149(Oryza sativa Indica Group)
STRINGLOC_Os04g48030.11e-149(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.12e-50HSF family protein