PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G18520.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 244aa    MW: 26269 Da    PI: 4.5295
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G18520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.6e-1960109255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr ++ +g+Wv+eIr+p++   + r++lg+f+tae+Aa+a++ a+++++g
  OPUNC04G18520.1  60 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFDTAEMAARAHDVAALAIKG 109
                      69****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.07E-2260118IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.8E-3360118IPR001471AP2/ERF domain
PfamPF008475.2E-1360109IPR001471AP2/ERF domain
PROSITE profilePS5103223.36760117IPR001471AP2/ERF domain
SMARTSM003806.6E-3860123IPR001471AP2/ERF domain
PRINTSPR003673.1E-116172IPR001471AP2/ERF domain
CDDcd000185.72E-3361119No hitNo description
PRINTSPR003673.1E-118399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEQEQVMSQE SNSCTCSSSS NDASSAAYSS LNASSPSSVD SRSAGGKKKR PRSDQLKHPT  60
YRGVRMRSWG KWVSEIREPR KKSRIWLGTF DTAEMAARAH DVAALAIKGR AAHLNFPDLA  120
GELPRAASAS PKDVQAAAAL AAATASPALS PSPCHDDVDA TADDEPESAE IEKTTAPVCV  180
VENGTLQQDG GIGLEYTYFT MPDALLEFGF TLPPPPPPQY YCGSPWDDDA DDFFFGEPLV  240
LWEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-19571171172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880927.11e-103ethylene-responsive transcription factor ERF039
TrEMBLA0A0E0KTK21e-180A0A0E0KTK2_ORYPU; Uncharacterized protein
STRINGOPUNC04G18520.11e-180(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.17e-45ERF family protein