PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G18310.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 304aa    MW: 32621.5 Da    PI: 5.198
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G18310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.15.9e-20133184256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      +y+GVr+++ +g+++AeIrdp+ +g   r++lg+++t+ eAa+a+++a+ +++g+
  OPUNC04G18310.1 133 KYRGVRQRP-WGKFAAEIRDPKRRG--SRVWLGTYDTPVEAARAYDRAAFRMRGA 184
                      8********.**********96554..**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-32132192IPR001471AP2/ERF domain
PfamPF008471.5E-14133183IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-22133192IPR016177DNA-binding domain
CDDcd000184.45E-29133192No hitNo description
PROSITE profilePS5103224.144133191IPR001471AP2/ERF domain
SMARTSM003805.5E-37133197IPR001471AP2/ERF domain
PRINTSPR003671.7E-13134145IPR001471AP2/ERF domain
PRINTSPR003671.7E-13173193IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDFPGDAEDF ALEFIREHLL GGDAPVPVPL PPAAGPAAGY PPAAMFLPQQ QRGYVGLTQE  60
YVVDSAPAAE AAFRDDQPEP AAEAMIMFGG ERFPAVKKAS SPSSSLTVTV PPSSLGSWAS  120
AAAPPVAVED FRKYRGVRQR PWGKFAAEIR DPKRRGSRVW LGTYDTPVEA ARAYDRAAFR  180
MRGAKAILNF PNEVGTRGAD LWATPPTNKR KRQPEDNTAD DVVEVIGVVN KAVKTEAPTS  240
AYSSSLSSMS RDTTATTSST GTSEPTSFPV TPSSWSWEQY WDGLPPLSPL SPHPALGFPQ  300
LTVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-26132196468ATERF1
3gcc_A1e-26132196468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635244.11e-134ethylene-responsive transcription factor ERF105
SwissprotO803414e-41EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A0E0KTH60.0A0A0E0KTH6_ORYPU; Uncharacterized protein
STRINGOPUNC04G18310.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.19e-34ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]