PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G17180.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 460aa    MW: 49406.9 Da    PI: 8.9551
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G17180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.7e-19209259256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  OPUNC04G17180.1 209 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 259
                      59******9.**********955...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.02E-32208267No hitNo description
SMARTSM003802.5E-38209272IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-32209267IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-23209268IPR016177DNA-binding domain
PROSITE profilePS5103222.998209266IPR001471AP2/ERF domain
PRINTSPR003678.3E-11210221IPR001471AP2/ERF domain
PfamPF008472.7E-12210259IPR001471AP2/ERF domain
PRINTSPR003678.3E-11232248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MDAPSGESGG GGGGRRWKGK GVTPIQPRRQ LGTVLEDSSA ALLRPLKKIG RSPDRLLRSA  60
SSLSTSSSAP PSPRSSSASD APVRVISSSP PSPSPPSARH IFPFAYEAST TTVGGSPRLH  120
PLWQQSSMSQ PASPQQQQRP LQHQQMISFG ASPPCSTTQF VVPENAQQQQ MLLRYWSEAL  180
NLSPRGGPGG VPPWLYQQLL RAPPPPQKLY RGVRQRHWGK WVAEIRLPRN RTRLWLGTFD  240
TAEDAAMAYD REAFKLRGEN ARLNFPDRFL GKGRAGGSGR TCVSSSAAAA ASCSSSSPSP  300
PETPDEANTQ QQAPQQREQR DTAGVSMEKK QPQPPAPNSR QEGCSGGDAA APYPAEMLHA  360
PASSGSMWVA PDESWFSTWG PGSSFWDDYD MDSARSLFLH PRFTGDETSM DHSGTQATVP  420
AAAATAAGIS MPCDDVPVTS SSDLPPQGTP HTPTFMWKED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-20208268465ATERF1
3gcc_A5e-20208268465ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629760.0AL662976.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8552300.0CR855230.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0115K01-H0319F09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634091.10.0ethylene-responsive transcription factor ERF054
TrEMBLA0A0E0KT340.0A0A0E0KT34_ORYPU; Uncharacterized protein
STRINGOPUNC04G17180.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.12e-35ERF family protein