PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G16970.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 207aa    MW: 22014 Da    PI: 11.0069
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G16970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.51.2e-3455169889
              TCP   8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.sec.....eaesssssasnsssg....... 88 
                       +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a  +c     +a+sss  ++    +       
  OPUNC04G16970.1  55 GKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAvFSCssapsTASSSSLLGK----Rprqedqe 144
                      589*******************************************************888885444432222222222222....12223443 PP

              TCP  89 ........................k 89 
                                              +
  OPUNC04G16970.1 145 apsfwealqqqprpvsswgalalvS 169
                      3333333333333433333333321 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.6E-3154153IPR005333Transcription factor, TCP
PROSITE profilePS5136927.00955109IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MASRDAATFQ VYRPMAMPTP AAMLPPSSQQ ITMPFKAAPG DAVLPAPRKA AAQGGKDRHS  60
KVNGRGRRVR MPIVCAARVF QLTRELGLKS DGQTIEWLLR QAEPSILAAT GSGTTPAVFS  120
CSSAPSTASS SSLLGKRPRQ EDQEAPSFWE ALQQQPRPVS SWGALALVSP SQEAQAYASS  180
VAQVHHLNLL SALSGAATRR PAQEESR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0647080.0AK064708.1 Oryza sativa Japonica Group cDNA clone:002-118-B01, full insert sequence.
GenBankAL6630190.0AL663019.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8552300.0CR855230.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0115K01-H0319F09, complete sequence.
GenBankCT8317190.0CT831719.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA017A04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635777.11e-122transcription factor TCP21
TrEMBLA0A0E0KT061e-146A0A0E0KT06_ORYPU; Uncharacterized protein
STRINGOPUNC04G16970.11e-146(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.15e-37TCP family protein