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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC04G08570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CAMTA | ||||||||
Protein Properties | Length: 1018aa MW: 114033 Da PI: 6.4569 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 165 | 1.3e-51 | 11 | 133 | 2 | 117 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpks......gsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahs 88 +ke ++rwlk++e++ iL+n+e++ +t e++++p+s gsl+Lynr++ ryfr+DG+ w++kkdg+tv E+he+LKvg+v++l+cyYah+ OPUNC04G08570.1 11 HKEaRRRWLKPSEVYYILQNHERFPITPEPPKKPPSvvrcpgGSLFLYNRRVNRYFRRDGHAWRRKKDGRTVGEAHERLKVGNVDALSCYYAHG 104 677799**************************99865555559*************************************************** PP CG-1 89 eenptfqrrcywlLeeelekivlvhylev 117 e+np fqrrc+w+Le ++e+ivlv+y+ev OPUNC04G08570.1 105 EQNPCFQRRCFWMLEPAYEHIVLVQYREV 133 ***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 74.452 | 7 | 139 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 5.8E-65 | 10 | 134 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 3.9E-43 | 13 | 132 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 1.6E-5 | 446 | 534 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 6.3E-15 | 446 | 528 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 8.1E-7 | 446 | 527 | IPR002909 | IPT domain |
SuperFamily | SSF48403 | 1.71E-15 | 477 | 521 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 4.7E-16 | 641 | 737 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.71E-15 | 641 | 738 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.114 | 643 | 735 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.78E-13 | 648 | 735 | No hit | No description |
Pfam | PF12796 | 4.7E-7 | 659 | 737 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 7.1E-4 | 676 | 705 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 10.259 | 676 | 708 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 1800 | 715 | 744 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 27 | 796 | 818 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.529 | 797 | 826 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 1.33E-6 | 852 | 902 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PROSITE profile | PS50096 | 7.95 | 855 | 884 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 19 | 856 | 876 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.022 | 857 | 875 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 1.7E-6 | 877 | 899 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 10.64 | 878 | 906 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 1.4E-5 | 879 | 899 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1018 aa Download sequence Send to blast |
MSLSFDINVL HKEARRRWLK PSEVYYILQN HERFPITPEP PKKPPSVVRC PGGSLFLYNR 60 RVNRYFRRDG HAWRRKKDGR TVGEAHERLK VGNVDALSCY YAHGEQNPCF QRRCFWMLEP 120 AYEHIVLVQY REVGPAEGRY NSASLLNGPT DSLSVLSYPN ATYGNQYLGS TSGVSDGSES 180 RHSNLSSVTE VSSYSANKDS GILRSIQELD QSTIMGAPAL GQSSLEQSIE VHRVDNSNST 240 NKSGLNRALK QIVEQLSLGD DEDDDYIHQA QPFDFITNIE APDRQRDASR NVSGDSQAIQ 300 IRAEEMQNSL GRGISSSWED VLQSSSAPHY PQNAEYQPPG SLYNSDMQQI SAAKRFLLET 360 EDSIDSPSYN YVPREGNNGT NTLSVHDYSL QSSLNPDWKK TAPLTLQSNS YGSEIPGLLL 420 DHGQFESLSS GENRRLTLGQ KQRFSIREFS PEWTYCYEIT KVIITGDFLC DPSSSCWAVM 480 FGDSEVPAEI VQAGVLRCHT PLRSSGKLTI CVTSGNREIC SEVKDFEFRA KSTASNFLDI 540 SPSSTSLKSS EELLLLAKFV RMLLCENGSH ANSNGDPQSG QYPKLKMNDE HWQRLIDELK 600 GGCEHPLNVS DWIMEELLKS KLQEWLSVKL QGYDGTACFL SKHEQGIIHL ISALGYEWAL 660 SSVLSAGVGV NFRDTNGWTA LHWAAYFGRE KMVAALLAAG VSAPAVTDPT AQDPVGKTAA 720 FLASERGHLG LAAYLSEVSL TSYLASLTIQ ESDTSKGSAA VEAERAVESI SQRNAQLHGG 780 TEDELSLKDS LAAVRNAAQA AARIQNAFRA FSFRKRQQKT ARLKDEYGMT QEDIDELAAA 840 SRSYYQSLLP NGQFYDKAAV SIQKKFKGWK GRRHFLNMRR NAVKIQAHVR GHQVRKKYKT 900 FVSTVSVLEK VILRWRRKGH GLRGFRAEQT AMAEAEEDDE DDDDDDDFND DEAVKMFRRQ 960 KVDESVKEAM SRVLSMVDSP EARMQYRRML EEFRQATDIT ANSHPKDEKD MLNSPKSN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK122001 | 0.0 | AK122001.1 Oryza sativa Japonica Group cDNA clone:J033110J06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635911.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 4 isoform X2 | ||||
TrEMBL | A0A0E0KPU0 | 0.0 | A0A0E0KPU0_ORYPU; Uncharacterized protein | ||||
STRING | LOC_Os04g31900.1 | 0.0 | (Oryza sativa Japonica Group) | ||||
STRING | ORGLA02G0342600.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6238 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |