PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G08500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 199aa    MW: 20788.5 Da    PI: 6.2649
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G08500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.77.2e-1280157487
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      ++ +s+v    ++v+p++fa    +k +++   t    +grsW +++  ++++    l++GW++F+ +n+L+ gD +vF+l++ 
  OPUNC04G08500.1  80 IMCKSHVQPPFQVVVPRSFAPLLPSK-TTP--AT-LAWRGRSWGMRF--TGGRLIQRLEAGWRGFAVDNDLRLGDGCVFELVDG 157
                      677899999999********544433.344..33.44699*******..88888899***********************8864 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.22E-1674158IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-1574177IPR015300DNA-binding pseudobarrel domain
CDDcd100171.34E-1375176No hitNo description
PROSITE profilePS5086312.16777178IPR003340B3 DNA binding domain
SMARTSM010190.009577178IPR003340B3 DNA binding domain
PfamPF023621.9E-978157IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MASDPTDLRC SSPECSGDAG AEDPAAALDA AEKSGGGGGG GGGEVAAGTE TVAPPRPPEP  60
EKVPRHGVLP LLGKPYFTCI MCKSHVQPPF QVVVPRSFAP LLPSKTTPAT LAWRGRSWGM  120
RFTGGRLIQR LEAGWRGFAV DNDLRLGDGC VFELVDGGGG GDGEHERVEF RVQVLRAEIP  180
ARIRGRAGGY TSATPIVID
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1199990.0AK119999.1 Oryza sativa Japonica Group cDNA clone:002-184-H05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635251.11e-98B3 domain-containing protein Os04g0386900
SwissprotQ7XLP41e-99Y4869_ORYSJ; B3 domain-containing protein Os04g0386900
TrEMBLA0A0E0KPT01e-139A0A0E0KPT0_ORYPU; Uncharacterized protein
STRINGOPUNC04G08500.11e-140(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89543545
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]