PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G35790.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 235aa    MW: 25132.7 Da    PI: 10.7256
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G35790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.6e-1875124255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      +++GVr+++ +gr++AeIrdp     +  +r +lg+f+taeeAa+a++aa  +l+g
  OPUNC03G35790.1  75 RFRGVRQRP-WGRFAAEIRDP-----HlrRRLWLGTFDTAEEAAAAYDAANVRLRG 124
                      69*******.**********8.....556*********************999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.99E-1874131No hitNo description
SMARTSM003803.8E-3275138IPR001471AP2/ERF domain
PfamPF008477.0E-1275124IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-2075132IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-2875132IPR001471AP2/ERF domain
PROSITE profilePS5103222.40575132IPR001471AP2/ERF domain
PRINTSPR003673.4E-107687IPR001471AP2/ERF domain
PRINTSPR003673.4E-1098114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGTNPSLHEL AAAAPPPRGR VVRILVRDAD ATDSSSSEDE APPPRPRRRG KVGGGGGGGV  60
KRRVMEAGEA RPAARFRGVR QRPWGRFAAE IRDPHLRRRL WLGTFDTAEE AAAAYDAANV  120
RLRGSSAATN FTSVRCYSLP PELPKPIIPP PEAAVRPITL PIGTAKPTLL TRVKEEGESC  180
GGRVKEEASS CEVQALAAEP MWTMISGKRK KRSGCGTRVR AFYAVSACVE EVGGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1876131662ATERF1
3gcc_A3e-1876131662ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1330070.0AC133007.4 Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete sequence.
GenBankAC1391720.0AC139172.2 Oryza sativa chromosome 3 BAC OSJNBb0042K11 genomic sequence, complete sequence.
GenBankAK0682520.0AK068252.1 Oryza sativa Japonica Group cDNA clone:J013145D23, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCU4062130.0CU406213.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108D05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628091.11e-122ethylene-responsive transcription factor CRF5
TrEMBLA0A0E0KKN41e-165A0A0E0KKN4_ORYPU; Uncharacterized protein
STRINGOPUNC03G35790.11e-166(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115732835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.14e-18ERF domain protein 10