PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G31000.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 471aa    MW: 52464.9 Da    PI: 5.3929
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G31000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1093.5e-341522422101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+ye+++d+ ++++isw   gnsfvv+d + fa  +Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +gkkell+
  OPUNC03G31000.1 152 FLSKTYEVVDDPGTDTVISWGFAGNSFVVWDANAFAAVLLPRYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGKKELLK 236
                      9****************************************************************999.........***************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                      +ikr++
  OPUNC03G31000.1 237 TIKRRR 242
                      ****97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.1E-37148241IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.3E-58148241IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.94E-34148241IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.2E-30152241IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-18152175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-18190202IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340191215IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-18203215IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MEHEDEKLIE RSPSPLILRL SLVILDHLNS THFDIFANFS ERQDRSRLNS FGGGRYPIFF  60
CQHRHSHRSF KFFCFVKWLC DLFIFLCYSI ALVGWLVMNP LRVIVKEEEL DFAAAAAAAA  120
AAGEGSPSSW AVGVMELPRP MEGLGEAGPP PFLSKTYEVV DDPGTDTVIS WGFAGNSFVV  180
WDANAFAAVL LPRYFKHSNF SSFVRQLNTY GFRKVDPDRW EFANEGFLRG KKELLKTIKR  240
RRPPPSSPSS SSSSSSSSQQ QQPAAVCLEV GQFGRDGEVN RLQRDKSVLI AEVVKLRQEQ  300
QTTRAQMQAM EERISAAELK QQQMTVFLAR AMKNPGFLQM LVDRQGQHGG RNRELEDALS  360
KKRRRPIEYL LTRNGETGAA GESAAVLAAD VVAEPEDDTT PRGEVGSRHG GGDTESFWMQ  420
LLSLGLEEKQ REGAAAGQES NSGGADVDNN EEDDDDDVDV LVQSIYHLSP K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-2713324110129Heat shock factor protein 1
5d5v_B4e-2713324110129Heat shock factor protein 1
5d5v_D4e-2713324110129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234240LKTIKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9981180.0AY998118.1 Oryza sativa heat shock protein 41 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628945.10.0PREDICTED: heat stress transcription factor A-2a
SwissprotQ84MN70.0HFA2A_ORYSJ; Heat stress transcription factor A-2a
TrEMBLA0A0E0KIX50.0A0A0E0KIX5_ORYPU; Uncharacterized protein
STRINGBGIOSGA009826-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-87heat shock transcription factor A2