PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G24100.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 764aa    MW: 85889.7 Da    PI: 8.396
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G24100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.45.6e-18421221499
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      + +v+p +fa++++g    s ++ l+++sg++W++ +   +++ +  vl++GWkeFv+ ng++e D ++F+++g s+f   v +f+ 
  OPUNC03G24100.1  42 KSMVVPTRFANNFNGH--ISEDVNLKSPSGKTWSIGV--ANSDTGeLVLRSGWKEFVDGNGVQEDDCLLFRYSGVSSF--DVLIFDP 122
                      459*******888666..6779***************..5555555***************************99999..8888875 PP

2B334.82.9e-112643321785
                      E--HHH.HTT---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3  17 vlpkkfaeehggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                       ++ +f+ ++ g+ ++  ++++e  s    ++W v++  r +s++ + ++GW++F+++ngL + D+++F+l 
  OPUNC03G24100.1 264 GVSPEFTGRYLGPVAR--EVVMERGSTggrEEWHVRFVRRECSRG-FHGTGWRQFARDNGLLAHDVCLFELR 332
                      5666777777445444..6888874445899******76777666.5788********************64 PP

3B349.11e-154344963499
                      SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  34 ktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        + l+++sg++W++ +  ++++ +  vl++GWkeFv+ ng++egD+++F+++g s+f   v +f+ 
  OPUNC03G24100.1 434 DHMNLRSPSGKTWSIGV--SNSDAGeLVLQSGWKEFVDGNGIEEGDSLLFRYSGVSSF--DVLIFDP 496
                      2599*************..5555445***************************99999..8888875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-2227125IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-2228128IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.64929123IPR003340B3 DNA binding domain
SMARTSM010195.7E-932123IPR003340B3 DNA binding domain
CDDcd100175.19E-1740121No hitNo description
PfamPF023628.7E-1542121IPR003340B3 DNA binding domain
SuperFamilySSF1019365.69E-14240336IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-14240356IPR015300DNA-binding pseudobarrel domain
CDDcd100171.40E-9244331No hitNo description
SMARTSM010190.027246347IPR003340B3 DNA binding domain
PROSITE profilePS508639.601248358IPR003340B3 DNA binding domain
PfamPF023625.6E-9263332IPR003340B3 DNA binding domain
SMARTSM010192.4E-4396497IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-18413499IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-12418495IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-16433501IPR015300DNA-binding pseudobarrel domain
CDDcd100171.10E-12436495No hitNo description
PROSITE profilePS5086313.648436497IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-6706731IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.443706747IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-5708754IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    Send to blast
MGMLKIGKNC SVCKEWQEHC YWSHMADDSK HFLTYMVGDF TKSMVVPTRF ANNFNGHISE  60
DVNLKSPSGK TWSIGVANSD TGELVLRSGW KEFVDGNGVQ EDDCLLFRYS GVSSFDVLIF  120
DPSGCEKASP HFVENRGFGR SEKFAGAEGG GRNVDKNGHH QHQLEMTLHK KSSRCRSIPR  180
ACKRGLFSDE IEQDHRDEKE DDDEDEKDGY YFCRHGGRVT EYNLTEGDKE EISRVPVPVE  240
PGNPVFVKVI HASHLLASRY TTVGVSPEFT GRYLGPVARE VVMERGSTGG REEWHVRFVR  300
RECSRGFHGT GWRQFARDNG LLAHDVCLFE LRMVGGGGGG LRHRSRRPTM TVHVLRRVRG  360
RFAMYHSDKT VRVPSEGLAQ CFTRLSAATS LGMVTFLGAL LRYPSSLSQR ESLGKNCSVC  420
KEWQEHCYWS HMADHMNLRS PSGKTWSIGV SNSDAGELVL QSGWKEFVDG NGIEEGDSLL  480
FRYSGVSSFD VLIFDPSGCE KASRFGRAEK FAGAEQGGRN GRRTPPIVDG DNGHHHHLEM  540
TLHRNSGRSI PRACKRSLFS DETEQDQQEN DDEDVVAAAE GSHGGYYFSR HGRISRVPVP  600
VEPGNPVFVQ VIHSSHARSS NYCIVLPLKS PPAHCTYQMA FQFPISWLKW TETVLLLFYY  660
VIVKACRRSS PGSICGRWRG MWCWRGRAGE GSDTPCSCTG RTPAGFYGGG WRQFAGDNHL  720
VAHDVCLFEL MMMDGASRRR SRSRRPTMTV HVLRRVRGRF VLLR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0635060.0AK063506.1 Oryza sativa Japonica Group cDNA clone:001-116-F06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630283.10.0B3 domain-containing protein Os03g0622100
SwissprotQ10GM40.0Y3221_ORYSJ; B3 domain-containing protein Os03g0622100
TrEMBLA0A0E0KGE90.0A0A0E0KGE9_ORYPU; Uncharacterized protein
STRINGOPUNC03G24100.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-30B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]