PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G24010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 563aa    MW: 63776 Da    PI: 9.1067
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G24010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.33.3e-1933117598
                      -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      +  s +++++ +++p+kf+e++ggk   s+t+ le+++g+++ vk+  +k+ +++vl+ GW+ Fv+a++++e+D+++F+++++s+f   v +++
  OPUNC03G24010.1  33 M--SANFEHS-MIIPNKFLEQFGGK--ISRTVELESPKGNVYVVKV--SKHMNKTVLRCGWEAFVDAHQIEENDSLLFRHIENSRF--AVLILD 117
                      4..5556655.***********999..888****************..*********************************99999..777776 PP

2B3505.3e-16250348399
                      EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS
               B3   3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 
                      +++++s+v+++ + lv+ k++a++h   +++s+t+tl+   ++r+W  k+ +rk + +y+l ++W +Fv+ n+++egD+++F+l+  + ++f+ 
  OPUNC03G24010.1 250 TIMKHSNVNSHhASLVIAKHYASAHF--PRTSQTITLKWqGKNRKWHPKFYIRKDQVGYILHGCWIDFVRHNHVNEGDICIFHLKkFTgRKFRA 341
                      677888888876789**********8..456778999984677*******77888888*************************98555688888 PP

                      EEEEE-S CS
               B3  93 vvkvfrk 99 
                      +v+++r+
  OPUNC03G24010.1 342 TVHLLRE 348
                      8888775 PP

3B355.97.5e-18463559599
                      -..-HHHHT..T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..E CS
               B3   5 ltpsdvlks..grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelv 93 
                      + +s+v++    +++l ++fa+++  ++ e+ tltl +  +g+ W+vk++  ++s++ ++t GW++Fv++n+L++ D+++F+l+ ++ ++  ++
  OPUNC03G24010.1 463 MNKSNVGTDglYIITLGRQFATRYL-PEGEQ-TLTLLTtGTGKAWQVKMR-PRSSDARMFTLGWRDFVRDNRLQTEDICLFQLMtNNeRGLAMT 553
                      55556666522345899******93.33344.5555554999*******4.44444589***********************994555666677 PP

                      EEEE-S CS
               B3  94 vkvfrk 99 
                      ++++r+
  OPUNC03G24010.1 554 IHIIRH 559
                      777765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.2E-2124121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.86E-2225125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.7626119IPR003340B3 DNA binding domain
CDDcd100171.73E-1827117No hitNo description
SMARTSM010192.7E-1029119IPR003340B3 DNA binding domain
PfamPF023623.8E-1733117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.2E-18239336IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.97E-19243344IPR015300DNA-binding pseudobarrel domain
CDDcd100173.98E-19246347No hitNo description
SMARTSM010192.6E-4248349IPR003340B3 DNA binding domain
PfamPF023626.3E-15249348IPR003340B3 DNA binding domain
PROSITE profilePS5086311.251249349IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.2E-21450560IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.11E-19452560IPR015300DNA-binding pseudobarrel domain
CDDcd100178.29E-14457558No hitNo description
SMARTSM010192.5E-9459560IPR003340B3 DNA binding domain
PfamPF023624.8E-16465559IPR003340B3 DNA binding domain
PROSITE profilePS5086312.689476560IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MAGQGSQMKK SCDCCKRYVD HSNGKMKCFH RQMSANFEHS MIIPNKFLEQ FGGKISRTVE  60
LESPKGNVYV VKVSKHMNKT VLRCGWEAFV DAHQIEENDS LLFRHIENSR FAVLILDSDG  120
CEKVFSCSGK RRASGVQERN ADPIDVSSST HDDTVQSSGG ERFARSESGS DSQHSKTAKL  180
GATCSSGRSG EDAKGSSTSE HESDYDLDDP QIAPMPGYVL SRGTSLSEAQ EEKLDMLVQD  240
IRPEIPLYVT IMKHSNVNSH HASLVIAKHY ASAHFPRTSQ TITLKWQGKN RKWHPKFYIR  300
KDQVGYILHG CWIDFVRHNH VNEGDICIFH LKKFTGRKFR ATVHLLRETN PHSFGALHIP  360
KRFESRNGRM RLKMTGDIRV SSTECRRGTM EPSTTNVKKE ADNDQCNNNQ GKRQEPLNFD  420
GPVGSSKPYL TADRVSLTEE QVRKVEEIAH SIQSEGPIYV SKMNKSNVGT DGLYIITLGR  480
QFATRYLPEG EQTLTLLTTG TGKAWQVKMR PRSSDARMFT LGWRDFVRDN RLQTEDICLF  540
QLMTNNERGL AMTIHIIRHN ERS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1004510.0AK100451.1 Oryza sativa Japonica Group cDNA clone:J023090P20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630232.20.0LOW QUALITY PROTEIN: B3 domain-containing protein Os03g0620500-like
SwissprotQ851W40.0Y3205_ORYSJ; B3 domain-containing protein Os03g0620500
TrEMBLA0A0E0KGD70.0A0A0E0KGD7_ORYPU; Uncharacterized protein
STRINGOPUNC03G24010.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-17B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]