PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G23990.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 561aa    MW: 64290 Da    PI: 8.5254
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G23990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.42e-1657139997
                      HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      +++  + +++p+kf+++++g    s+t+ le+++g ++ vk+  +k+ ++++l+ GW+ F +a++++e+D+++F+++++s+f   v ++
  OPUNC03G23990.1  57 SANFGHSMTIPNKFLDHFEGT--LSRTIELESPKGIVYIVKV--TKHMNKTILQCGWEAFLDAHHIEENDSLLFRHIENSRF--EVLIL 139
                      4444567********888877..899****************..*********************************99999..66665 PP

2B358.71e-18271370198
                      EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE CS
               B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sef 90 
                      f+ ++++s+v+++ ++lv+pk++a +h   ++es+t+tl+   ++++W  k+ +rk +++y+l + W +Fv++n++kegD+++F+l+  +   f
  OPUNC03G23990.1 271 FVAIMKHSNVNSHrACLVIPKRYACAHF--PHESQTITLQRqGKNKKWHPKFYVRKDGSAYMLHGRWINFVRDNHVKEGDMCIFHLTkFTeGAF 362
                      6778888999888778********9997..457789999995666*******77999999*************************885445777 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                      + +v+++r
  OPUNC03G23990.1 363 RATVHLLR 370
                      77777776 PP

3B357.81.9e-18462557599
                      -..-HHHHTT-E..E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
               B3   5 ltpsdvlksgrl..vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                      + +s+v+++g+   ++  +fa+++ +++ e++   l++ +++ W+vk+  r +sg   ++t+GW++Fv++n+L+  D+++F+l+++ s+ +++v
  OPUNC03G23990.1 462 MNKSNVGTNGLYtiIFGTQFAARY-LPEGEQTLTLLMTGKSNAWQVKM--RPRSGDaQMITTGWRHFVRDNRLQIEDICLFQLMNDeSTLTMTV 552
                      556666776543226679999999.3444455566777899*******..77777779**************************998******* PP

                      EEE-S CS
               B3  95 kvfrk 99 
                      +++r+
  OPUNC03G23990.1 553 HIIRH 557
                      **997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.89E-2048148IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-1848144IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.01249142IPR003340B3 DNA binding domain
SMARTSM010194.1E-552142IPR003340B3 DNA binding domain
PfamPF023628.4E-1557138IPR003340B3 DNA binding domain
CDDcd100175.89E-1557140No hitNo description
Gene3DG3DSA:2.40.330.101.8E-21263366IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-24265367IPR015300DNA-binding pseudobarrel domain
CDDcd100172.64E-22269370No hitNo description
SMARTSM010193.9E-9271365IPR003340B3 DNA binding domain
PfamPF023629.8E-18271371IPR003340B3 DNA binding domain
PROSITE profilePS5086313.197272372IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-21450558IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.32E-19451558IPR015300DNA-binding pseudobarrel domain
CDDcd100173.53E-15456556No hitNo description
SMARTSM010190.0011458558IPR003340B3 DNA binding domain
PROSITE profilePS5086311.914458558IPR003340B3 DNA binding domain
PfamPF023626.5E-18460557IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MRVLVDYLHL QLTYICYKFQ FTCMAEQDSQ MKKSCDWSKR YVDHLNGKMK CFHMQMSANF  60
GHSMTIPNKF LDHFEGTLSR TIELESPKGI VYIVKVTKHM NKTILQCGWE AFLDAHHIEE  120
NDSLLFRHIE NSRFEVLILD SDGCEKVFSC AGIKRTSSVK ERNAAPVDIS SSTHDETTQS  180
SGSKRIVRCQ KASDSQCGKT TKMAATSSLR ESGEEGTDSS TSEDESSYEL DDPQMSPGRN  240
YVLSRWTSLS EAQEEKVDML VQDIQPEIPV FVAIMKHSNV NSHRACLVIP KRYACAHFPH  300
ESQTITLQRQ GKNKKWHPKF YVRKDGSAYM LHGRWINFVR DNHVKEGDMC IFHLTKFTEG  360
AFRATVHLLR ETKSGSFGSF HTSHKRFDLR DGRMWPKVTG ARRVSSTEDR CNKGEGKRQD  420
SRGSSKPYLT ADRVSLTEEQ VRKLEEVVHP IQSEGPMYVS IMNKSNVGTN GLYTIIFGTQ  480
FAARYLPEGE QTLTLLMTGK SNAWQVKMRP RSGDAQMITT GWRHFVRDNR LQIEDICLFQ  540
LMNDESTLTM TVHIIRHNEK S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1021690.0AK102169.1 Oryza sativa Japonica Group cDNA clone:J033086H19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628609.10.0B3 domain-containing protein Os03g0620400 isoform X1
SwissprotQ851W50.0Y3204_ORYSJ; B3 domain-containing protein Os03g0620400
TrEMBLA0A0E0KGD30.0A0A0E0KGD3_ORYPU; Uncharacterized protein
STRINGOPUNC03G23990.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-18B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]