PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G17850.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 417aa    MW: 44646.6 Da    PI: 5.72
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G17850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573111.55.5e-35129228297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifel 91 
                      lfqrlw+eeDeiv+L+++ +f+a++g+   +++ d+d fye +++++++++sksqlveK+rrLK+K++++v++ +++g+++sf+++h+q ife+
  OPUNC03G17850.1 129 LFQRLWTEEDEIVILRAFAEFTAQRGTafASHQyDTDPFYEDMRRRLQLDFSKSQLVEKLRRLKRKYRNCVDRlRATGQSFSFRSPHEQAIFEI 222
                      79*************************9977778***************************************999****************** PP

           DUF573  92 skkiWg 97 
                      ++ iW+
  OPUNC03G17850.1 223 ARGIWR 228
                      *****7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.0E-30130227IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MTRSYDFFSP LGRSREARNN PNPLPNPNPD SSRDRSPSIS DPIPNPMLPT VVDDPSAAAA  60
VGAAASSSFP DADVYGNGDS DDIDFPSDPN HATTQAFSSA AGGAAGPGGG GGGGGGAGSG  120
GGGGERRPLF QRLWTEEDEI VILRAFAEFT AQRGTAFASH QYDTDPFYED MRRRLQLDFS  180
KSQLVEKLRR LKRKYRNCVD RLRATGQSFS FRSPHEQAIF EIARGIWRPT SDKHGRDDSD  240
DDALPDAAAV AVPVPVPVPA PANGEVKSPS STRAQRRGRR RRTADAAATT ADASEPPQPY  300
PPAPVKAEDA LPHFFPQAQG AVTTAHVHGV DPASAAANAE GGILAPLFKE MVRAMLTAGM  360
APPALEPPAL GIPMEGEKWR QQRILELEVY LRRIDLLQDQ VRTALEELKS TPPATTQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0826440.0AC082644.10 Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632846.11e-160probable transcription factor At3g04930
TrEMBLA0A0E0KE640.0A0A0E0KE64_ORYPU; Uncharacterized protein
STRINGOPUNC03G17850.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.24e-33DNA-binding storekeeper protein-related transcriptional regulator