PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G05860.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 312aa    MW: 34952 Da    PI: 6.5504
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G05860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-18121171155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++y+GVr+++ +gr++AeIrdp++    +r++lg++g+aeeAa a+++ +++++g
  OPUNC03G05860.1 121 KKYRGVRRRP-SGRFAAEIRDPKK---GRRVWLGTYGSAEEAAMAYDREARRIRG 171
                      59********.7*********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.04E-28121179No hitNo description
SMARTSM003801.1E-33122185IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-28122179IPR001471AP2/ERF domain
PfamPF008474.2E-12122171IPR001471AP2/ERF domain
PROSITE profilePS5103221.799122179IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-20122180IPR016177DNA-binding domain
PRINTSPR003671.8E-7123134IPR001471AP2/ERF domain
PRINTSPR003671.8E-7145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MCGGAILAEL TPARVHRRLT VSEILPETTT PPAERRTTTT RPKRKAASAS RSYDVDFEAE  60
FELFEDDDDD EEAEFEISED DEDGDETLAV SFSSDVSSSS RPLRRVAAAA GRRKASKEEK  120
KKYRGVRRRP SGRFAAEIRD PKKGRRVWLG TYGSAEEAAM AYDREARRIR GKCARLNFPG  180
DLDGSPRRRN LPCWTIDLNL PAPAAVSDDD DAMAVDAGRA GQRGSEPAES KIKELIKQGP  240
HNDAKFKLTE DTSSSKTRVS MALQLQYYAA LVAECDREME EIAAVERDLE RRRRQVLEHR  300
GHLVRQASLL LN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-20121179160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-19121179463ATERF1
3gcc_A1e-19121179463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112129RKASKEEKKKYRGVRRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2297401e-149AC229740.1 Oryza minuta clone OM__Ba0228D20, complete sequence.
GenBankAC2297611e-149AC229761.1 Oryza minuta clone OM__Ba0159K04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006651102.11e-100PREDICTED: ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A0E0K9Q10.0A0A0E0K9Q1_ORYPU; Uncharacterized protein
STRINGOPUNC03G05860.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136642229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.19e-23ERF family protein