PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G04310.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 362aa    MW: 41321.6 Da    PI: 5.1178
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G04310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.73.3e-32411312101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+++++ d++++ ++sw + gnsfvv+d++ fa  +Lp++Fkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+++ll+
  OPUNC03G04310.1  41 FLTKTFDLVADPATDGVVSWGRAGNSFVVWDPHVFAAVLLPRFFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANDGFLRGQRHLLK 125
                      9****************************************************************999.........***************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                       ikr++
  OPUNC03G04310.1 126 MIKRRR 131
                      ****97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-3637130IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.43E-3537130IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-5837130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-184164IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.8E-3041130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-187991IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434080104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-1892104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEAMMVPGIV KEEWPPSSPE EGEEEAPRPM EGLHEVGPPP FLTKTFDLVA DPATDGVVSW  60
GRAGNSFVVW DPHVFAAVLL PRFFKHNNFS SFVRQLNTYG FRKIDPDRWE FANDGFLRGQ  120
RHLLKMIKRR RPLSYIPGSQ QALGTCLEVG QFGLDEEIDM LKRDKNILLA EVVKLRHEQQ  180
STKANMRVME ERLQHAEQKQ VQMMGFLARA MQNPDFFHQL IHQQDKMKGL EDTFSKKRTR  240
SIDIVPFLNP GEVSQGDQLE STLLFDPRPF DELNDEPAKS ELENLALNIQ GLGKGKQDVN  300
GTRNESRNQA SNETELTDDF WEELLNEGAR DEAGVPGMEQ RRPRYVDALA QKLGYLSNSS  360
QK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-253913018120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123129LKMIKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1057290.0AC105729.2 Oryza sativa Japonica Group chromosome 3 clone OJ1607A12, complete sequence.
GenBankAY3444890.0AY344489.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF7 mRNA, complete cds.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankAK0668440.0AK066844.1 Oryza sativa Japonica Group cDNA clone:J013088J01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649439.20.0PREDICTED: heat stress transcription factor A-2d
SwissprotQ8H7Y60.0HFA2D_ORYSJ; Heat stress transcription factor A-2d
TrEMBLA0A0E0K9350.0A0A0E0K935_ORYPU; Uncharacterized protein
STRINGBGIOSGA011916-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-102heat shock transcription factor A6B