PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G01540.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 312aa    MW: 34295.7 Da    PI: 10.1874
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G01540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.68.9e-3237141199
                      EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.s 88 
                      f+kv tpsdv+k++rlv+pk++ae++      ++e++  l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F +  g+  
  OPUNC03G01540.1  37 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldAASNEKGLLLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGvGEaA 130
                      89****************************55567889*************************************************6658889 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      +++l++ ++r+
  OPUNC03G01540.1 131 RGRLFIDWRRR 141
                      999**999997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-4030142IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.8E-2934125IPR015300DNA-binding pseudobarrel domain
CDDcd100174.37E-2635122No hitNo description
SMARTSM010192.6E-2137142IPR003340B3 DNA binding domain
PfamPF023621.3E-2837141IPR003340B3 DNA binding domain
PROSITE profilePS5086314.36737142IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MEFITPIVRP SVAVGGGELQ ESGRSLPAEA VEKEHMFDKV VTPSDVGKLN RLVIPKQHAE  60
KYFPLDAASN EKGLLLSFED RTGKPWRFRY SYWNSSQSYV MTKGWSRFVK EKRLDAGDTV  120
SFGRGVGEAA RGRLFIDWRR RPDVVAALQP PTHRFQLPSS IPFAPWPAHH HHGATGAGAR  180
FLLPPSTPIY DHNRRHAHAV GYDAYAAATS RQVLFYRPLP QQQQQQHPAV VLESVPVRMT  240
AGHAEPSVAS SAPSKRVRLF GVNLDCANSE QDHAGVVGKT APPPQSLQQL PSPPSSSSSS  300
SGKARCSLNL DL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-65321443116B3 domain-containing transcription factor NGA1
5os9_B6e-65321443116B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2175820.0AC217582.2 Oryza punctata clone OP__Ba0071K23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628752.11e-174B3 domain-containing protein Os03g0120900
SwissprotQ8LMR91e-175Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A0E0K8220.0A0A0E0K822_ORYPU; Uncharacterized protein
STRINGOPUNC03G01540.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-72B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]