PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G01290.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 162aa    MW: 17400.4 Da    PI: 4.4253
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G01290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.7e-172474156
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     + y+G+r +  +g+Wv+eIr+p   gk+ r++lg++ t+e+Aa+a++ a+++l+g+
  OPUNC03G01290.1 24 PVYRGIRLR--SGKWVSEIREP---GKSSRIWLGTYQTPEMAAAAYDVAALALRGA 74
                     68****986..5*********8...557*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-102473IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-272581IPR001471AP2/ERF domain
SMARTSM003804.1E-272587IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-182581IPR016177DNA-binding domain
PROSITE profilePS5103219.9412581IPR001471AP2/ERF domain
CDDcd000189.45E-172681No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MDQDESSGML PLTGRRVRAD TRHPVYRGIR LRSGKWVSEI REPGKSSRIW LGTYQTPEMA  60
AAAYDVAALA LRGADAALNF PGTATSRPAP ASSSPDDIAA GAGDQKRVVD EDDVFEMPRL  120
LVSMAEGLMM SPPRLSPVTD GVGGVSPEDD EDEDGMSLWN HS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-132681663ATERF1
3gcc_A2e-132681663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2365271e-161AC236527.1 Oryza minuta clone OM__Ba0059E04, complete sequence.
GenBankAC2365421e-161AC236542.1 Oryza minuta clone OM__Ba0185B12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880266.15e-86ethylene-responsive transcription factor ERF027
RefseqXP_025880267.15e-86ethylene-responsive transcription factor ERF027
SwissprotQ9SJR04e-37ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A0E0K7Y61e-112A0A0E0K7Y6_ORYPU; Uncharacterized protein
STRINGOPUNC03G01290.11e-113(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.12e-17C-repeat/DRE binding factor 1