PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G35370.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 230aa    MW: 23685.7 Da    PI: 10.5311
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G35370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.75.1e-3929131289
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg..... 88 
                      a++k +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++  +++s +s++   +s+     
  OPUNC02G35370.1  29 AVRKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStsSPSSLRSNS---NSNdlllp 119
                      789*************************************************************9999988843222222222...22235666 PP

              TCP  89 ...........k 89 
                                 +
  OPUNC02G35370.1 120 raapfilgkrlR 131
                      555555543331 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.2093589IPR017887Transcription factor TCP subgroup
PfamPF036346.5E-3335113IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MTTRPDGGGA APDKQLVPAS NGNGTTALAV RKPPSKDRHS KVDGRGRRIR MPIICAARVF  60
QLTRELGHKS DGQTIEWLLR QAEPSIIAAT GTGTTPASFS TSSPSSLRSN SNSNDLLLPR  120
AAPFILGKRL RAADDQTADP APAPDAAVPT QGFWALPARA DFGQLWSFAA APEMMVAAAA  180
PAMTGEASAA RVGNYLPMAQ GNLNLLASFS GGPGGAGAAA TGRAEEESAR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2407980.0AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence.
GenBankAP0047760.0AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627477.11e-98transcription factor TCP7
SwissprotQ9FMX22e-76TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A0E0K7851e-162A0A0E0K785_ORYPU; Uncharacterized protein
STRINGOPUNC02G35370.11e-163(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.17e-43TCP family protein