PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G25480.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 224aa    MW: 23890.4 Da    PI: 5.1109
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G25480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.2e-1853103155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + +kGVr++   grWv+e+r+p   g ++r++lg+f tae+Aa+a++ a+++l+g
  OPUNC02G25480.1  53 PVFKGVRRRN-PGRWVCEVREP--HG-KQRIWLGTFETAEMAARAHDVAALALRG 103
                      579****887.9******9996..33.5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-1353103IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2154112IPR016177DNA-binding domain
SMARTSM003804.5E-2854117IPR001471AP2/ERF domain
PROSITE profilePS5103221.66754111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-3054113IPR001471AP2/ERF domain
PRINTSPR003678.6E-85566IPR001471AP2/ERF domain
CDDcd000182.87E-2055113No hitNo description
PRINTSPR003678.6E-87793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MDVSAALSSD YSSGTPSPVA ADADDGSSAY MTVSSAPPKR RAGRTKFKET RHPVFKGVRR  60
RNPGRWVCEV REPHGKQRIW LGTFETAEMA ARAHDVAALA LRGRAACLNF ADSPRRLRVP  120
PIGASHDDIR RAAAEAAEAF RPPPDESNAT TEVAAAASGA TNSNAAQFAS HPYYEVVDDG  180
LDFGMQGYLD MAQGMLIDPP PMAGDPAVGG GEDDNDGEVQ LWSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-14521101271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00644PBMTransfer from LOC_Os02g45450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624757.11e-140dehydration-responsive element-binding protein 1G
SwissprotQ6EP771e-141DRE1G_ORYSJ; Dehydration-responsive element-binding protein 1G
TrEMBLA0A0E0K3K41e-162A0A0E0K3K4_ORYPU; Uncharacterized protein
STRINGOPUNC02G25480.11e-163(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.11e-34dehydration response element B1A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chen JQ,Meng XP,Zhang Y,Xia M,Wang XP
    Over-expression of OsDREB genes lead to enhanced drought tolerance in rice.
    Biotechnol. Lett., 2008. 30(12): p. 2191-8
    [PMID:18779926]