PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G24090.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 343aa    MW: 35848 Da    PI: 5.5628
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G24090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.5e-20153204256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      +y+GVr+++ +g+++AeIrdp+++g   r++lg+++ta eAa+a+++a+ +++g+
  OPUNC02G24090.1 153 KYRGVRQRP-WGKFAAEIRDPKKRG--SRVWLGTYDTAIEAARAYDRAAFRMRGA 204
                      8********.***********8876..**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-32152212IPR001471AP2/ERF domain
SMARTSM003808.5E-38153217IPR001471AP2/ERF domain
PfamPF008471.6E-14153203IPR001471AP2/ERF domain
CDDcd000181.47E-30153212No hitNo description
SuperFamilySSF541712.42E-22153212IPR016177DNA-binding domain
PROSITE profilePS5103224.25153211IPR001471AP2/ERF domain
PRINTSPR003672.1E-13154165IPR001471AP2/ERF domain
PRINTSPR003672.1E-13193213IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDFSGDIDDL ISLQLLHDQL LGVDVGADAC LPVGAHDGAA AYAEQQGFHP AAFLPQQPTM  60
PPAGYVNMAN DQYMGAAGVS AGEAVYRAAA VEPVMIRFGG EMSSPVSDPL RPPLTISLPP  120
TSHAWAAAEP VHPAALLQAQ SAAAAADPND FRKYRGVRQR PWGKFAAEIR DPKKRGSRVW  180
LGTYDTAIEA ARAYDRAAFR MRGAKAILNF PNEVGSRGAD FLAPPPPPPT TTSHGKRKRH  240
ETAAADPDVE VIGESSKSVK TETYTSPASS SLASTTTSTV TSSSTSHSPS SEAAACGGGG  300
GGGELFVPLT PSSWSWDQLD GLFGSLSPLS PHPQMGFPEV AVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-27152216468ATERF1
3gcc_A1e-27152216468ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624058.11e-161ethylene-responsive transcription factor 5
TrEMBLA0A0E0K3400.0A0A0E0K340_ORYPU; Uncharacterized protein
STRINGOPUNC02G24090.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.11e-22ERF family protein