PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G23010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 214aa    MW: 22045.9 Da    PI: 10.8106
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G23010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.33.3e-35571478105
              TCP   8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaakskksq 101
                       +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tgt++++a ++++++ s s+s++++         +k+++
  OPUNC02G23010.1  57 GKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGTGTTPAAFVSSSAPSTSSSHQHIL-------LGKRQR 143
                      5899999***************************************************99999666222222222222222.......222222 PP

              TCP 102 ksaa 105
                      +++a
  OPUNC02G23010.1 144 QESA 147
                      2222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.0E-3156140IPR005333Transcription factor, TCP
PROSITE profilePS5136927.00957111IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MSSRDAAAAA ATFHVYQPVQ IPTATVAPAA AVSAAPAEAV AQLVPAPSKK AAGAAGGKDR  60
HSKVNGRGRR VRMPIVCAAR VFQLTRELGL KSDGQTIEWL LRQAEPSILA ATGTGTTPAA  120
FVSSSAPSTS SSHQHILLGK RQRQESADAA AVSVAGAASA FWAALPAPGR PDAWGFSPLD  180
AQPTYVPMAQ AHHHHLNLLA ALSGAARRAE EESR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00655PBMTransfer from LOC_Os02g42380Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0615680.0AK061568.1 Oryza sativa Japonica Group cDNA clone:006-311-F05, full insert sequence.
GenBankAP0040670.0AP004067.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1581_H09.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624938.12e-99transcription factor TCP7
SwissprotQ9FMX25e-40TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A0E0K2S01e-149A0A0E0K2S0_ORYPU; Uncharacterized protein
STRINGOPUNC02G23010.11e-149(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.12e-27TCP family protein